#include <phaseresettingcurve.h>

Inheritance diagram for PhaseResettingCurve:

Collaboration diagram for PhaseResettingCurve:

Public Member Functions
	PhaseResettingCurve (void)

virtual void	preConfig (void)

virtual int	main (void)

Public Member Functions inherited from ConfigDialog
	ConfigDialog (const string &configident="", int configgroup=0, const string &name="", const string &author="", const string &version="", const string &date=__DATE__)

virtual	~ConfigDialog (void)

string	name (void) const

virtual void	setName (const string &name)

string	author (void) const

virtual void	setAuthor (const string &author)

string	version (void) const

virtual void	setVersion (const string &version)

string	date (void) const

virtual void	setDate (const string &date)

virtual OptWidget *	dialogOptions (OptDialog od, string tabhotkeys=0)

virtual void	dialogButtons (OptDialog *od)

virtual void	dialogEmptyMessage (OptDialog *od)

int	dialogSelectMask (void) const

void	setDialogSelectMask (int mask)

void	addDialogSelectMask (int mask)

int	dialogReadOnlyMask (void) const

void	setDialogReadOnlyMask (int mask)

void	addDialogReadOnlyMask (int mask)

int	dialogStyle (void) const

void	setDialogStyle (int style)

void	addDialogStyle (int style)

string	dialogCaption (void) const

void	setDialogCaption (const string &caption)

bool	dialogHeader (void) const

void	setDialogHeader (bool d)

string	headerBackgroundColor (void) const

void	setHeaderBackgroundColor (const string &color)

string	headerForegroundColor (void) const

void	setHeaderForegroundColor (const string &color)

string	headerImageFile (void) const

void	setHeaderImageFile (const string &file)

virtual void	dialogHeaderWidget (OptDialog *od)

bool	dialogHelp (void) const

void	setDialogHelp (bool d)

string	helpCaption (void) const

void	setHelpCaption (const string &caption)

string	helpPath (int inx=0) const

int	helpPathes (void) const

void	clearHelpPathes (void)

void	setHelpPath (const string &path)

void	addHelpPath (const string &path)

virtual string	helpFileName (void) const

bool	dialogOpen (void) const

bool	helpOpen (void) const

QWidget *	mainWidget (void)

virtual void	setMainWidget (QWidget *widget)

void	lock () const

void	unlock () const

bool	tryLock (int timeout=1)

QMutex *	mutex (void)

Public Member Functions inherited from ConfigClass
	ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0)

	ConfigClass (const ConfigClass &C)

virtual	~ConfigClass (void)

const string &	configIdent (void) const

void	setConfigIdent (const string &ident)

int	configGroup (void) const

void	setConfigGroup (int group)

int	configMode (void) const

void	setConfigMode (int mode)

void	addConfigMode (int mode)

void	delConfigMode (int mode)

int	configSelectMask (void) const

void	setConfigSelectMask (int mask)

void	addConfig (void)

void	readConfig (void)

virtual void	readConfig (StrQueue &sq)

virtual void	saveConfig (ofstream &str)

virtual int	configSize (void) const

virtual void	config (void)

Protected Member Functions
void	openTraceFile (ofstream &tf, TableKey &tracekey, const Options &header)

void	saveTrace (ofstream &tf, TableKey &tracekey, int index, list< SampleDataF > &voltage, list< SampleDataF > &current, double T, double Tmean, double Tpert, double t, double dt, double p, double dp)

void	saveSpikes (const Options &header, const EventList &spikes, const ArrayD &periods, const ArrayD &meanperiods, const ArrayD &perturbedperiods, const MapD &prctimes, const MapD &prcphases)

void	saveData (const Options &header, const ArrayD &periods, const ArrayD &meanperiods, const ArrayD &perturbedperiods, const MapD &prctimes, const MapD &prcphases)

void	savePRC (const Options &header, const MapD &prcphases)

Protected Member Functions inherited from ConfigDialog
void	setDialogOpen (bool open=true)

void	setHelpOpen (bool open=true)

Protected Attributes
Plot	P

string	VUnit

string	IUnit

double	IInFac

double	PrevDCAmplitude

Protected Attributes inherited from ConfigDialog
Options	DialogOptions

Additional Inherited Members
Public Types inherited from ConfigClass
enum	Action

Public Slots inherited from ConfigDialog
virtual void	dialog (void)

virtual void	help (void)

virtual void	notifyDialog (const Options &opt)

Signals inherited from ConfigDialog
void	dialogAccepted (void)

void	dialogAction (int r)

void	dialogClosed (int r)

Static Public Member Functions inherited from ConfigClass
static void	setConfigureClasses (ConfigureClasses *cfg)

Protected Slots inherited from ConfigDialog
void	notificationFromDialog (const Parameter &p)

virtual void	dClosed (int r)

virtual void	hClosed (int r)

Detailed Description

[RePro] Measures phase-resetting curves of spiking neurons.

Author: Jan Benda

Version: 1.1 (Dec 14, 2010)

Screenshot

Options

dcamplitudesrc=DC: Set dc-current to (string)
dcamplitude=0nA: Amplitude of dc-current (number)
amplitude=0.1nA: Test-pulse amplitude (number)
duration=1ms: Duration of test-pulse (number)
nperiods=5: Number of ISIs between test-pulses (integer)
repeats=100: Number of test-pulses (integer)
rateduration=1000ms: Time for initial estimate of firing rate (number)
averageisis=10test-pulses: Average ISI over (integer)

Constructor & Destructor Documentation

PhaseResettingCurve ( void )

References Plot::lock(), PhaseResettingCurve::P, PhaseResettingCurve::PrevDCAmplitude, Plot::setBMarg(), Plot::setLMarg(), Plot::setRMarg(), Plot::setTMarg(), Plot::setXLabel(), Plot::setXRange(), Plot::setYLabel(), Plot::setYLabelPos(), Plot::setYRange(), and Plot::unlock().

Member Function Documentation

void preConfig ( void )

virtual

Reimplemented from ConfigClass.

References PhaseResettingCurve::IInFac, PhaseResettingCurve::IUnit, and PhaseResettingCurve::VUnit.

int main ( void )

virtual

Implements RePro.

References Array< T >::begin(), SampleData< T >::clear(), Plot::clear(), OutData::constWave(), InData::copy(), EventData::count(), Plot::draw(), Array< T >::end(), PhaseResettingCurve::IUnit, line(), SampleData< T >::line(), Plot::lock(), max(), median(), min(), minMax(), PhaseResettingCurve::openTraceFile(), PhaseResettingCurve::P, Plot::plot(), Plot::plotHLine(), SampleData< T >::pos(), EventData::previous(), OutData::pulseWave(), Array< T >::push(), Map< T >::push(), EventList::push(), Array< T >::reserve(), Map< T >::reserve(), EventList::reserve(), Plot::resetRanges(), PhaseResettingCurve::saveData(), PhaseResettingCurve::savePRC(), PhaseResettingCurve::saveSpikes(), PhaseResettingCurve::saveTrace(), OutData::setIdent(), OutData::setTrace(), Plot::setYRange(), Array< T >::size(), EventData::size(), Map< T >::size(), SampleData< T >::size(), InData::stepsize(), Plot::unlock(), Map< T >::x(), Map< T >::y(), and Plot::zoomedYRange().

void openTraceFile	(	ofstream &	tf,
		TableKey &	tracekey,
		const Options &	header
	)

protected

References TableKey::addNumber(), PhaseResettingCurve::IUnit, TableKey::saveKey(), and PhaseResettingCurve::VUnit.

Referenced by PhaseResettingCurve::main().

void saveTrace	(	ofstream &	tf,
		TableKey &	tracekey,
		int	index,
		list< SampleDataF > &	voltage,
		list< SampleDataF > &	current,
		double	T,
		double	Tmean,
		double	Tpert,
		double	t,
		double	dt,
		double	p,
		double	dp
	)

protected

References TableKey::save().

Referenced by PhaseResettingCurve::main().

void saveSpikes	(	const Options &	header,
		const EventList &	spikes,
		const ArrayD &	periods,
		const ArrayD &	meanperiods,
		const ArrayD &	perturbedperiods,
		const MapD &	prctimes,
		const MapD &	prcphases
	)

protected

References TableKey::addNumber(), TableKey::saveKey(), EventList::saveText(), EventList::size(), Map< T >::x(), and Map< T >::y().

Referenced by PhaseResettingCurve::main().

void saveData	(	const Options &	header,
		const ArrayD &	periods,
		const ArrayD &	meanperiods,
		const ArrayD &	perturbedperiods,
		const MapD &	prctimes,
		const MapD &	prcphases
	)