MembraneResistance Class Reference

#include <membraneresistance.h>

Inheritance diagram for MembraneResistance:

Collaboration diagram for MembraneResistance:

Public Member Functions
	MembraneResistance (void)
virtual void	preConfig (void)
virtual int	main (void)
void	analyzeOn (double duration, double sswidth, bool nossfit)
void	analyzeOff (double duration, double sswidth, bool nossfit)
void	plot (void)
void	save (void)
void	saveData (void)
void	saveTrace (const Options &header)
void	saveExpFit (const Options &header)
Public Member Functions inherited from ConfigDialog
	ConfigDialog (const string &configident="", int configgroup=0, const string &name="", const string &author="", const string &version="", const string &date=__DATE__)
virtual	~ConfigDialog (void)
string	name (void) const
virtual void	setName (const string &name)
string	author (void) const
virtual void	setAuthor (const string &author)
string	version (void) const
virtual void	setVersion (const string &version)
string	date (void) const
virtual void	setDate (const string &date)
virtual OptWidget *	dialogOptions (OptDialog *od, string *tabhotkeys=0)
virtual void	dialogButtons (OptDialog *od)
virtual void	dialogEmptyMessage (OptDialog *od)
int	dialogSelectMask (void) const
void	setDialogSelectMask (int mask)
void	addDialogSelectMask (int mask)
int	dialogReadOnlyMask (void) const
void	setDialogReadOnlyMask (int mask)
void	addDialogReadOnlyMask (int mask)
int	dialogStyle (void) const
void	setDialogStyle (int style)
void	addDialogStyle (int style)
string	dialogCaption (void) const
void	setDialogCaption (const string &caption)
bool	dialogHeader (void) const
void	setDialogHeader (bool d)
string	headerBackgroundColor (void) const
void	setHeaderBackgroundColor (const string &color)
string	headerForegroundColor (void) const
void	setHeaderForegroundColor (const string &color)
string	headerImageFile (void) const
void	setHeaderImageFile (const string &file)
virtual void	dialogHeaderWidget (OptDialog *od)
bool	dialogHelp (void) const
void	setDialogHelp (bool d)
string	helpCaption (void) const
void	setHelpCaption (const string &caption)
string	helpPath (int inx=0) const
int	helpPathes (void) const
void	clearHelpPathes (void)
void	setHelpPath (const string &path)
void	addHelpPath (const string &path)
virtual string	helpFileName (void) const
bool	dialogOpen (void) const
bool	helpOpen (void) const
QWidget *	mainWidget (void)
virtual void	setMainWidget (QWidget *widget)
void	lock () const
void	unlock () const
bool	tryLock (int timeout=1)
QMutex *	mutex (void)
Public Member Functions inherited from ConfigClass
	ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0)
	ConfigClass (const ConfigClass &C)
virtual	~ConfigClass (void)
const string &	configIdent (void) const
void	setConfigIdent (const string &ident)
int	configGroup (void) const
void	setConfigGroup (int group)
int	configMode (void) const
void	setConfigMode (int mode)
void	addConfigMode (int mode)
void	delConfigMode (int mode)
int	configSelectMask (void) const
void	setConfigSelectMask (int mask)
void	addConfig (void)
void	readConfig (void)
virtual void	readConfig (StrQueue &sq)
virtual void	saveConfig (ofstream &str)
virtual int	configSize (void) const
virtual void	config (void)

Protected Attributes
Plot	P
string	VUnit
string	IUnit
double	VFac
double	IFac
double	IInFac
SampleDataD	MeanVoltage
SampleDataD	SquareVoltage
SampleDataD	StdevVoltage
deque< int >	TraceIndices
deque< SampleDataD >	MeanTraces
deque< SampleDataD >	SquareTraces
double	DCCurrent
double	Amplitude
double	Duration
double	VRest
double	VRestsd
double	VSS
double	VSSsd
double	VPeak
double	VPeaksd
int	VPeakInx
double	VPeakTime
double	RMss
double	RMOn
double	CMOn
double	TauMOn
double	RMOff
double	CMOff
double	TauMOff
SampleDataF	ExpOn
SampleDataF	ExpOff
int	Count
vector< string >	OutParams
Protected Attributes inherited from ConfigDialog
Options	DialogOptions

Additional Inherited Members
Public Types inherited from ConfigClass
enum	Action
Public Slots inherited from ConfigDialog
virtual void	dialog (void)
virtual void	help (void)
virtual void	notifyDialog (const Options &opt)
Signals inherited from ConfigDialog
void	dialogAccepted (void)
void	dialogAction (int r)
void	dialogClosed (int r)
Static Public Member Functions inherited from ConfigClass
static void	setConfigureClasses (ConfigureClasses *cfg)
Protected Slots inherited from ConfigDialog
void	notificationFromDialog (const Parameter &p)
virtual void	dClosed (int r)
virtual void	hClosed (int r)
Protected Member Functions inherited from ConfigDialog
void	setDialogOpen (bool open=true)
void	setHelpOpen (bool open=true)

Detailed Description

[RePro] Measures membrane resistance, capacitance, and time constant with current pulses

Author

Jan Benda

Version

1.6 (Oct 9, 2015)

Screenshot

Options

• Stimulus
  • amplitude=-0.1nA: Amplitude of output signal (number)
  • duration=500ms: Duration of output (number)
  • pause=1000ms: Duration of pause bewteen outputs (number)
  • repeats=100: Repetitions of stimulus (integer)
• Analysis
  • skipspikes=true: Skip trials with detected spikes (boolean)
  • sswidth=100ms: Window length for steady-state analysis (number)
  • nossfit=false: Fix steady-state potential for fit (boolean)
  • plotstdev=true: Plot standard deviation of membrane potential (boolean)
  • setdata=rest only: Set results to the session variables (string)
  • checkoutput=Current-1: Outputs that need to be at their default value (string)

Constructor & Destructor Documentation

MembraneResistance

(

void

)

References Plot::lock(), MembraneResistance::P, Plot::setXLabel(), and Plot::unlock().

Member Function Documentation

void preConfig ( void  )

virtual

Reimplemented from ConfigClass.

References MembraneResistance::IFac, MembraneResistance::IInFac, MembraneResistance::IUnit, MembraneResistance::VFac, and MembraneResistance::VUnit.

int main ( void  )

virtual

Implements RePro.

References MembraneResistance::Amplitude, MembraneResistance::analyzeOff(), MembraneResistance::analyzeOn(), Plot::clear(), MembraneResistance::CMOff, MembraneResistance::CMOn, OutData::constWave(), MembraneResistance::Count, MembraneResistance::DCCurrent, Plot::draw(), MembraneResistance::Duration, DaqError::errorText(), MembraneResistance::ExpOff, MembraneResistance::ExpOn, DaqError::failed(), MembraneResistance::IUnit, Plot::lock(), MembraneResistance::MeanTraces, MembraneResistance::MeanVoltage, MembraneResistance::OutParams, MembraneResistance::P, MembraneResistance::plot(), OutData::pulseWave(), SampleData< T >::rangeBack(), SampleData< T >::rangeFront(), MembraneResistance::RMOff, MembraneResistance::RMOn, MembraneResistance::RMss, MembraneResistance::save(), OutData::setIdent(), OutData::setTrace(), Plot::setXRange(), Plot::setYLabel(), MembraneResistance::SquareTraces, MembraneResistance::SquareVoltage, MembraneResistance::StdevVoltage, MembraneResistance::TauMOff, MembraneResistance::TauMOn, MembraneResistance::TraceIndices, Plot::unlock(), MembraneResistance::VPeak, MembraneResistance::VPeakInx, MembraneResistance::VPeaksd, MembraneResistance::VPeakTime, MembraneResistance::VRest, MembraneResistance::VRestsd, MembraneResistance::VSS, MembraneResistance::VSSsd, and MembraneResistance::VUnit.

void analyzeOn	(	double	duration,
		double	sswidth,
		bool	nossfit
	)

References MembraneResistance::Amplitude, LinearRange::begin(), SampleData< T >::begin(), MembraneResistance::CMOn, MembraneResistance::Count, expFunc(), expFuncDerivs(), MembraneResistance::ExpOn, MembraneResistance::IFac, MembraneResistance::IInFac, SampleData< T >::index(), marquardtFit(), SampleData< T >::maxIndex(), SampleData< T >::mean(), MembraneResistance::MeanTraces, MembraneResistance::MeanVoltage, SampleData< T >::minIndex(), SampleData< T >::pos(), SampleData< T >::range(), MembraneResistance::RMOn, MembraneResistance::RMss, InData::signalIndex(), SampleData< T >::size(), InData::size(), sqrt(), MembraneResistance::SquareTraces, MembraneResistance::SquareVoltage, SampleData< T >::stdev(), MembraneResistance::StdevVoltage, MembraneResistance::TauMOn, MembraneResistance::TraceIndices, MembraneResistance::VFac, MembraneResistance::VPeak, MembraneResistance::VPeakInx, MembraneResistance::VPeaksd, MembraneResistance::VPeakTime, MembraneResistance::VRest, MembraneResistance::VRestsd, MembraneResistance::VSS, and MembraneResistance::VSSsd.

Referenced by MembraneResistance::main().

void analyzeOff	(	double	duration,
		double	sswidth,
		bool	nossfit
	)

References MembraneResistance::Amplitude, LinearRange::begin(), SampleData< T >::begin(), MembraneResistance::CMOff, expFunc(), expFuncDerivs(), MembraneResistance::ExpOff, MembraneResistance::IFac, SampleData< T >::index(), SampleData< T >::interval(), marquardtFit(), MembraneResistance::MeanVoltage, SampleData< T >::pos(), SampleData< T >::range(), MembraneResistance::RMOff, SampleData< T >::size(), MembraneResistance::StdevVoltage, MembraneResistance::TauMOff, MembraneResistance::VFac, MembraneResistance::VPeakInx, MembraneResistance::VRest, and MembraneResistance::VSS.

Referenced by MembraneResistance::main().

void plot

(

void

)

References Plot::clear(), MembraneResistance::CMOn, Plot::draw(), MembraneResistance::Duration, MembraneResistance::ExpOff, MembraneResistance::ExpOn, Plot::lock(), MembraneResistance::MeanVoltage, minMax(), MembraneResistance::P, Plot::plot(), Plot::plotVLine(), MembraneResistance::RMOn, Plot::setTitle(), MembraneResistance::StdevVoltage, MembraneResistance::TauMOn, and Plot::unlock().

Referenced by MembraneResistance::main().

void save

(

void

)

References MembraneResistance::CMOff, MembraneResistance::CMOn, MembraneResistance::Count, MembraneResistance::OutParams, MembraneResistance::RMOff, MembraneResistance::RMOn, MembraneResistance::RMss, MembraneResistance::saveData(), MembraneResistance::saveExpFit(), MembraneResistance::saveTrace(), MembraneResistance::TauMOff, MembraneResistance::TauMOn, MembraneResistance::VPeak, MembraneResistance::VPeakTime, MembraneResistance::VRest, MembraneResistance::VRestsd, MembraneResistance::VSS, and MembraneResistance::VUnit.

Referenced by MembraneResistance::main().

void saveData

(

void

)

References TableKey::addNumber(), MembraneResistance::Amplitude, MembraneResistance::CMOff, MembraneResistance::CMOn, MembraneResistance::Count, MembraneResistance::DCCurrent, MembraneResistance::Duration, MembraneResistance::IUnit, TableKey::newSection(), MembraneResistance::RMOff, MembraneResistance::RMOn, MembraneResistance::RMss, TableKey::saveData(), TableKey::saveKey(), sqrt(), MembraneResistance::TauMOff, MembraneResistance::TauMOn, MembraneResistance::VPeak, MembraneResistance::VPeaksd, MembraneResistance::VPeakTime, MembraneResistance::VRest, MembraneResistance::VRestsd, MembraneResistance::VSS, MembraneResistance::VSSsd, and MembraneResistance::VUnit.

Referenced by MembraneResistance::save().

void saveTrace

(

const Options &

header

)

References TableKey::addNumber(), MembraneResistance::IUnit, MembraneResistance::MeanTraces, MembraneResistance::MeanVoltage, SampleData< T >::pos(), TableKey::save(), TableKey::saveKey(), SampleData< T >::size(), sqrt(), MembraneResistance::SquareTraces, MembraneResistance::StdevVoltage, MembraneResistance::TraceIndices, and MembraneResistance::VUnit.

Referenced by MembraneResistance::save().

void saveExpFit

(

const Options &

header

)

References TableKey::addNumber(), MembraneResistance::ExpOff, MembraneResistance::ExpOn, TableKey::newSection(), SampleData< T >::pos(), TableKey::save(), TableKey::saveKey(), SampleData< T >::size(), and MembraneResistance::VUnit.

Referenced by MembraneResistance::save().

Member Data Documentation

Plot P

protected

Referenced by MembraneResistance::main(), MembraneResistance::MembraneResistance(), and MembraneResistance::plot().

string VUnit

protected

Referenced by MembraneResistance::main(), MembraneResistance::preConfig(), MembraneResistance::save(), MembraneResistance::saveData(), MembraneResistance::saveExpFit(), and MembraneResistance::saveTrace().

string IUnit

protected

Referenced by MembraneResistance::main(), MembraneResistance::preConfig(), MembraneResistance::saveData(), and MembraneResistance::saveTrace().

double VFac

protected

Referenced by MembraneResistance::analyzeOff(), MembraneResistance::analyzeOn(), and MembraneResistance::preConfig().

double IFac

protected

Referenced by MembraneResistance::analyzeOff(), MembraneResistance::analyzeOn(), and MembraneResistance::preConfig().

double IInFac

protected

Referenced by MembraneResistance::analyzeOn(), and MembraneResistance::preConfig().

SampleDataD MeanVoltage

protected

Referenced by MembraneResistance::analyzeOff(), MembraneResistance::analyzeOn(), MembraneResistance::main(), MembraneResistance::plot(), and MembraneResistance::saveTrace().

SampleDataD SquareVoltage

protected

Referenced by MembraneResistance::analyzeOn(), and MembraneResistance::main().

SampleDataD StdevVoltage

protected

Referenced by MembraneResistance::analyzeOff(), MembraneResistance::analyzeOn(), MembraneResistance::main(), MembraneResistance::plot(), and MembraneResistance::saveTrace().

deque< int > TraceIndices

protected

Referenced by MembraneResistance::analyzeOn(), MembraneResistance::main(), and MembraneResistance::saveTrace().

deque< SampleDataD > MeanTraces

protected

Referenced by MembraneResistance::analyzeOn(), MembraneResistance::main(), and MembraneResistance::saveTrace().

deque< SampleDataD > SquareTraces

protected

Referenced by MembraneResistance::analyzeOn(), MembraneResistance::main(), and MembraneResistance::saveTrace().

double DCCurrent

protected

Referenced by MembraneResistance::main(), and MembraneResistance::saveData().

double Amplitude

protected

Referenced by MembraneResistance::analyzeOff(), MembraneResistance::analyzeOn(), MembraneResistance::main(), and MembraneResistance::saveData().

double Duration

protected

Referenced by MembraneResistance::main(), MembraneResistance::plot(), and MembraneResistance::saveData().

double VRest

protected

Referenced by MembraneResistance::analyzeOff(), MembraneResistance::analyzeOn(), MembraneResistance::main(), MembraneResistance::save(), and MembraneResistance::saveData().

double VRestsd

protected

Referenced by MembraneResistance::analyzeOn(), MembraneResistance::main(), MembraneResistance::save(), and MembraneResistance::saveData().

double VSS

protected

Referenced by MembraneResistance::analyzeOff(), MembraneResistance::analyzeOn(), MembraneResistance::main(), MembraneResistance::save(), and MembraneResistance::saveData().

double VSSsd

protected

Referenced by MembraneResistance::analyzeOn(), MembraneResistance::main(), and MembraneResistance::saveData().

double VPeak

protected

Referenced by MembraneResistance::analyzeOn(), MembraneResistance::main(), MembraneResistance::save(), and MembraneResistance::saveData().

double VPeaksd

protected

Referenced by MembraneResistance::analyzeOn(), MembraneResistance::main(), and MembraneResistance::saveData().

int VPeakInx

protected

Referenced by MembraneResistance::analyzeOff(), MembraneResistance::analyzeOn(), and MembraneResistance::main().

double VPeakTime

protected

Referenced by MembraneResistance::analyzeOn(), MembraneResistance::main(), MembraneResistance::save(), and MembraneResistance::saveData().

double RMss

protected

Referenced by MembraneResistance::analyzeOn(), MembraneResistance::main(), MembraneResistance::save(), and MembraneResistance::saveData().

double RMOn

protected

Referenced by MembraneResistance::analyzeOn(), MembraneResistance::main(), MembraneResistance::plot(), MembraneResistance::save(), and MembraneResistance::saveData().

double CMOn

protected

Referenced by MembraneResistance::analyzeOn(), MembraneResistance::main(), MembraneResistance::plot(), MembraneResistance::save(), and MembraneResistance::saveData().

double TauMOn

protected

Referenced by MembraneResistance::analyzeOn(), MembraneResistance::main(), MembraneResistance::plot(), MembraneResistance::save(), and MembraneResistance::saveData().

double RMOff

protected

Referenced by MembraneResistance::analyzeOff(), MembraneResistance::main(), MembraneResistance::save(), and MembraneResistance::saveData().

double CMOff

protected

Referenced by MembraneResistance::analyzeOff(), MembraneResistance::main(), MembraneResistance::save(), and MembraneResistance::saveData().

double TauMOff

protected

Referenced by MembraneResistance::analyzeOff(), MembraneResistance::main(), MembraneResistance::save(), and MembraneResistance::saveData().

SampleDataF ExpOn

protected

Referenced by MembraneResistance::analyzeOn(), MembraneResistance::main(), MembraneResistance::plot(), and MembraneResistance::saveExpFit().

SampleDataF ExpOff

protected

Referenced by MembraneResistance::analyzeOff(), MembraneResistance::main(), MembraneResistance::plot(), and MembraneResistance::saveExpFit().

int Count

protected

Referenced by MembraneResistance::analyzeOn(), MembraneResistance::main(), MembraneResistance::save(), and MembraneResistance::saveData().

vector< string > OutParams

protected

Referenced by MembraneResistance::main(), and MembraneResistance::save().

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The documentation for this class was generated from the following files:

• membraneresistance.h
• membraneresistance.cc