Auditory Relacs Plugins  0.9.8
Public Member Functions | Protected Member Functions | Protected Attributes | List of all members
SysLatency Class Reference

#include <syslatency.h>

Inheritance diagram for SysLatency:
Inheritance graph
[legend]
Collaboration diagram for SysLatency:
Collaboration graph
[legend]

Public Member Functions

 SysLatency (void)
 
 ~SysLatency (void)
 
virtual int main (void)
 
void saveSpikes (Options &header, const EventList &spikes)
 
void saveTrigger (Options &header, const ArrayD &trigger)
 
void saveCoincidentSpikes (Options &header, const MapD &coincidentspikes)
 
void savePRC (Options &header, const MapD &prc)
 
void save (double carrierfrequency, int side, double pduration, double intensity, const EventList &spikes, const ArrayD &trigger, const MapD &coincidentspikes, const MapD &prc, double spikewidth, double latency, double latencysd, int maxcoincidence, double coinclatency, double offset, double slope, double meanrate)
 
void plot (const MapD &coincidentspikes, const MapD &prc, double coinclatency, double offset, double slope, double meanrate)
 
void analyze (double duration, double skipwin, double analysewin, double pduration, double coincwin, double maxlatency, double latencystep, EventList &spikes, const ArrayD &trigger, MapD &coincidentspikes, MapD &prc, double &spikewidth, double &latency, double &latencysd, int &maxcoincidence, double &coinclatency, double &offset, double &slope, double &meanrate)
 
- Public Member Functions inherited from ConfigDialog
 ConfigDialog (const string &configident="", int configgroup=0, const string &name="", const string &author="", const string &version="", const string &date=__DATE__)
 
virtual ~ConfigDialog (void)
 
string name (void) const
 
virtual void setName (const string &name)
 
string author (void) const
 
virtual void setAuthor (const string &author)
 
string version (void) const
 
virtual void setVersion (const string &version)
 
string date (void) const
 
virtual void setDate (const string &date)
 
virtual OptWidget * dialogOptions (OptDialog *od, string *tabhotkeys=0)
 
virtual void dialogButtons (OptDialog *od)
 
virtual void dialogEmptyMessage (OptDialog *od)
 
int dialogSelectMask (void) const
 
void setDialogSelectMask (int mask)
 
void addDialogSelectMask (int mask)
 
int dialogReadOnlyMask (void) const
 
void setDialogReadOnlyMask (int mask)
 
void addDialogReadOnlyMask (int mask)
 
int dialogStyle (void) const
 
void setDialogStyle (int style)
 
void addDialogStyle (int style)
 
string dialogCaption (void) const
 
void setDialogCaption (const string &caption)
 
bool dialogHeader (void) const
 
void setDialogHeader (bool d)
 
string headerBackgroundColor (void) const
 
void setHeaderBackgroundColor (const string &color)
 
string headerForegroundColor (void) const
 
void setHeaderForegroundColor (const string &color)
 
string headerImageFile (void) const
 
void setHeaderImageFile (const string &file)
 
virtual void dialogHeaderWidget (OptDialog *od)
 
bool dialogHelp (void) const
 
void setDialogHelp (bool d)
 
string helpCaption (void) const
 
void setHelpCaption (const string &caption)
 
string helpPath (int inx=0) const
 
int helpPathes (void) const
 
void clearHelpPathes (void)
 
void setHelpPath (const string &path)
 
void addHelpPath (const string &path)
 
virtual string helpFileName (void) const
 
bool dialogOpen (void) const
 
bool helpOpen (void) const
 
QWidget * mainWidget (void)
 
virtual void setMainWidget (QWidget *widget)
 
void lock () const
 
void unlock () const
 
bool tryLock (int timeout=1)
 
QMutex * mutex (void)
 
- Public Member Functions inherited from ConfigClass
 ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0)
 
 ConfigClass (const ConfigClass &C)
 
virtual ~ConfigClass (void)
 
const string & configIdent (void) const
 
void setConfigIdent (const string &ident)
 
int configGroup (void) const
 
void setConfigGroup (int group)
 
int configMode (void) const
 
void setConfigMode (int mode)
 
void addConfigMode (int mode)
 
void delConfigMode (int mode)
 
int configSelectMask (void) const
 
void setConfigSelectMask (int mask)
 
void addConfig (void)
 
void readConfig (void)
 
virtual void readConfig (StrQueue &sq)
 
virtual void saveConfig (ofstream &str)
 
virtual int configSize (void) const
 
virtual void config (void)
 
virtual void preConfig (void)
 
- Public Member Functions inherited from StandardTraces
 StandardTraces (void)
 

Protected Member Functions

int coincidentSpikes (double coincwin, double latency, double offset, const EventList &spikes, const ArrayD &trigger)
 
void phaseResponse (double duration, double skipwin, double analysewin, double latency, const EventList &spikes, const ArrayD &trigger, MapD &prc)
 
- Protected Member Functions inherited from ConfigDialog
void setDialogOpen (bool open=true)
 
void setHelpOpen (bool open=true)
 

Protected Attributes

MultiPlot P
 
- Protected Attributes inherited from ConfigDialog
Options DialogOptions
 

Additional Inherited Members

- Public Types inherited from ConfigClass
enum  Action
 
- Public Slots inherited from ConfigDialog
virtual void dialog (void)
 
virtual void help (void)
 
virtual void notifyDialog (const Options &opt)
 
- Signals inherited from ConfigDialog
void dialogAccepted (void)
 
void dialogAction (int r)
 
void dialogClosed (int r)
 
- Static Public Member Functions inherited from ConfigClass
static void setConfigureClasses (ConfigureClasses *cfg)
 
- Protected Slots inherited from ConfigDialog
void notificationFromDialog (const Parameter &p)
 
virtual void dClosed (int r)
 
virtual void hClosed (int r)
 
- Static Protected Member Functions inherited from StandardTraces
static void clearIndices (int *traceindices, int n=-1)
 
static void initStandardTraces (const InList &data, int *ntraces, int *traceindices, const string *names, string &namelist, bool alpha=false)
 
static void initStandardEventTraces (const InList &data, const EventList &events, int *ntraces, int *traceindices, int *eventindices, const string *tracenames, const string *eventnames, string &tracenamelist, string &eventnamelist, bool alpha=false)
 
static void initStandardOutputs (const RELACSPlugin *rp, int *ntraces, int *traceindices, const string *names, string &namelist, bool alpha=false)
 
- Static Protected Attributes inherited from StandardTraces
static const int MaxTraces
 

Detailed Description

[RePro] Measures latency of the whole system, i.e. signal delay, transduction, synapses, axonal delay, ...

Author
Jan Benda
Options
  • Stimulus
  • rate=100Hz: Target firing rate (number)
  • pwaves=10: Number of cycles of pertubation (integer)
  • pintensity=10dB: Intensity of pertubations (number)
  • minpintensity=4dB: Minimum intensity of pertubations (number)
  • carrierfreq=5kHz: Frequency of carrier (number)
  • usebestfreq=true: Use the cell's best frequency (boolean)
  • ramp=2ms: Ramp of stimulus (number)
  • duration=600ms: Duration of stimulus (number)
  • pause=600ms: Pause (number)
  • repeats=10: Number of stimulus repetitions (integer)
  • side=left: Speaker (string)
  • Analysis
  • skipwin=100ms: Initial portion of stimulus not used for analysis (number)
  • analysewin=10ms: Window used for ISI analysis (number)
  • maxlat=10ms: Maximum latency (number)
  • latstep=0.1ms: Resolution of latency (number)
  • coincwin=0.5ms: Window width for coincident spikes (number)
Version
1.5 (Jan 10, 2008)

Constructor & Destructor Documentation

SysLatency ( void  )

Constructor.

References MultiPlot::lock(), SysLatency::P, MultiPlot::resize(), and MultiPlot::unlock().

~SysLatency ( void  )

Destructor.

Member Function Documentation

int main ( void  )
virtual

Implements RePro.

References SysLatency::analyze(), OutData::append(), OutData::capacity(), DaqError::clearError(), OutData::duration(), Map< T >::empty(), DaqError::error(), DaqError::errorText(), Session::fICurve(), OutData::indices(), OutData::intensity(), MultiPlot::lock(), relacs::maxIndex(), DaqError::overflow(), SysLatency::P, SysLatency::plot(), Array< T >::push(), OutData::ramp(), Array< T >::reserve(), OutData::reserve(), Map< T >::reserve(), SysLatency::save(), OutData::setBestSample(), OutData::setIdent(), OutData::setIntensity(), OutData::setTrace(), SampleData< T >::sin(), OutData::size(), Map< T >::size(), Array< T >::size(), Session::ssFICurve(), OutData::stepsize(), MultiPlot::unlock(), Map< T >::x(), and Map< T >::y().

void saveSpikes ( Options &  header,
const EventList &  spikes 
)

References TableKey::addNumber(), TableKey::saveKey(), and EventList::saveText().

Referenced by SysLatency::save().

void saveTrigger ( Options &  header,
const ArrayD &  trigger 
)

References TableKey::addNumber(), TableKey::save(), TableKey::saveKey(), and Array< T >::size().

Referenced by SysLatency::save().

void saveCoincidentSpikes ( Options &  header,
const MapD &  coincidentspikes 
)

References TableKey::addNumber(), TableKey::save(), TableKey::saveKey(), Map< T >::size(), Map< T >::x(), and Map< T >::y().

Referenced by SysLatency::save().

void savePRC ( Options &  header,
const MapD &  prc 
)

References TableKey::addNumber(), TableKey::save(), TableKey::saveKey(), Map< T >::size(), Map< T >::x(), and Map< T >::y().

Referenced by SysLatency::save().

void save ( double  carrierfrequency,
int  side,
double  pduration,
double  intensity,
const EventList &  spikes,
const ArrayD &  trigger,
const MapD &  coincidentspikes,
const MapD &  prc,
double  spikewidth,
double  latency,
double  latencysd,
int  maxcoincidence,
double  coinclatency,
double  offset,
double  slope,
double  meanrate 
)

References SysLatency::saveCoincidentSpikes(), SysLatency::savePRC(), SysLatency::saveSpikes(), SysLatency::saveTrigger(), Array< T >::size(), and EventList::size().

Referenced by SysLatency::main().

void plot ( const MapD &  coincidentspikes,
const MapD &  prc,
double  coinclatency,
double  offset,
double  slope,
double  meanrate 
)

Plot data.

References MultiPlot::clear(), MultiPlot::draw(), MultiPlot::lock(), SysLatency::P, and MultiPlot::unlock().

Referenced by SysLatency::main().

void analyze ( double  duration,
double  skipwin,
double  analysewin,
double  pduration,
double  coincwin,
double  maxlatency,
double  latencystep,
EventList &  spikes,
const ArrayD &  trigger,
MapD &  coincidentspikes,
MapD &  prc,
double &  spikewidth,
double &  latency,
double &  latencysd,
int &  maxcoincidence,
double &  coinclatency,
double &  offset,
double &  slope,
double &  meanrate 
)

Analyze data.

References Map< T >::clear(), SysLatency::coincidentSpikes(), EventList::latency(), Map< T >::lineFit(), SysLatency::phaseResponse(), EventList::push(), Map< T >::push(), EventList::rate(), Map< T >::reserve(), EventList::size(), Map< T >::size(), Map< T >::x(), and Map< T >::y().

Referenced by SysLatency::main().

int coincidentSpikes ( double  coincwin,
double  latency,
double  offset,
const EventList &  spikes,
const ArrayD &  trigger 
)
protected

References EventList::size(), and Array< T >::size().

Referenced by SysLatency::analyze().

void phaseResponse ( double  duration,
double  skipwin,
double  analysewin,
double  latency,
const EventList &  spikes,
const ArrayD &  trigger,
MapD &  prc 
)
protected

References Array< T >::back(), Map< T >::clear(), Map< T >::push(), EventList::size(), and Array< T >::size().

Referenced by SysLatency::analyze().

Member Data Documentation

MultiPlot P
protected

Referenced by SysLatency::main(), SysLatency::plot(), and SysLatency::SysLatency().

The documentation for this class was generated from the following files:
Generated on Tue May 9 2017 18:45:52 for Auditory Relacs Plugins by   doxygen 1.8.6