#include <singlestimulus.h>

Inheritance diagram for SingleStimulus:

Collaboration diagram for SingleStimulus:

Public Slots
virtual void	notifyDialog (const Options &opt)

Public Slots inherited from ConfigDialog
virtual void	dialog (void)

virtual void	help (void)

virtual void	notifyDialog (const Options &opt)

Public Member Functions
	SingleStimulus (void)

	~SingleStimulus (void)

virtual void	preConfig (void)

virtual int	main (void)

void	openTraceFile (ofstream &tf, TableKey &tracekey, const Options &header)

void	saveTrace (ofstream &tf, TableKey &tracekey, int index, const SampleDataF &voltage)

void	saveMeanTrace (Options &header, const SampleDataF &meanvoltage)

void	saveSpikes (Options &header, const EventList &spikes)

void	saveRate (Options &header, const SampleDataD &rate1, const SampleDataD &rate2)

void	plot (const EventList &spikes, const SampleDataD &rate1, const SampleDataD &rate2, const SampleDataF &voltage, const SampleDataF &meanvoltage)

void	analyze (EventList &spikes, SampleDataD &rate1, SampleDataD &rate2, double before, double after)

Public Member Functions inherited from ConfigDialog
	ConfigDialog (const string &configident="", int configgroup=0, const string &name="", const string &author="", const string &version="", const string &date=__DATE__)

virtual	~ConfigDialog (void)

string	name (void) const

virtual void	setName (const string &name)

string	author (void) const

virtual void	setAuthor (const string &author)

string	version (void) const

virtual void	setVersion (const string &version)

string	date (void) const

virtual void	setDate (const string &date)

virtual OptWidget *	dialogOptions (OptDialog od, string tabhotkeys=0)

virtual void	dialogButtons (OptDialog *od)

virtual void	dialogEmptyMessage (OptDialog *od)

int	dialogSelectMask (void) const

void	setDialogSelectMask (int mask)

void	addDialogSelectMask (int mask)

int	dialogReadOnlyMask (void) const

void	setDialogReadOnlyMask (int mask)

void	addDialogReadOnlyMask (int mask)

int	dialogStyle (void) const

void	setDialogStyle (int style)

void	addDialogStyle (int style)

string	dialogCaption (void) const

void	setDialogCaption (const string &caption)

bool	dialogHeader (void) const

void	setDialogHeader (bool d)

string	headerBackgroundColor (void) const

void	setHeaderBackgroundColor (const string &color)

string	headerForegroundColor (void) const

void	setHeaderForegroundColor (const string &color)

string	headerImageFile (void) const

void	setHeaderImageFile (const string &file)

virtual void	dialogHeaderWidget (OptDialog *od)

bool	dialogHelp (void) const

void	setDialogHelp (bool d)

string	helpCaption (void) const

void	setHelpCaption (const string &caption)

string	helpPath (int inx=0) const

int	helpPathes (void) const

void	clearHelpPathes (void)

void	setHelpPath (const string &path)

void	addHelpPath (const string &path)

virtual string	helpFileName (void) const

bool	dialogOpen (void) const

bool	helpOpen (void) const

QWidget *	mainWidget (void)

virtual void	setMainWidget (QWidget *widget)

void	lock () const

void	unlock () const

bool	tryLock (int timeout=1)

QMutex *	mutex (void)

Public Member Functions inherited from ConfigClass
	ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0)

	ConfigClass (const ConfigClass &C)

virtual	~ConfigClass (void)

const string &	configIdent (void) const

void	setConfigIdent (const string &ident)

int	configGroup (void) const

void	setConfigGroup (int group)

int	configMode (void) const

void	setConfigMode (int mode)

void	addConfigMode (int mode)

void	delConfigMode (int mode)

int	configSelectMask (void) const

void	setConfigSelectMask (int mask)

void	addConfig (void)

void	readConfig (void)

virtual void	readConfig (StrQueue &sq)

virtual void	saveConfig (ofstream &str)

virtual int	configSize (void) const

virtual void	config (void)

Public Member Functions inherited from StandardTraces
	StandardTraces (void)

Protected Types
enum	WaveTypes { Wave =0, Envelope, AM }

enum	WaveForms { File =0, Const, Sine, Rectangular, Triangular, Sawup, Sawdown, Whitenoise, OUnoise }

enum	StoreModes { SessionPath, ReProPath, CustomPath }

enum	StoreLevels { All, AMGenerated, Generated, Noise, None }

Protected Member Functions
int	createStimulus (OutData &signal, const Str &file, double &duration, bool stoream)

void	customEvent (QEvent *qce)

Protected Member Functions inherited from ConfigDialog
void	setDialogOpen (bool open=true)

void	setHelpOpen (bool open=true)

Protected Attributes
double	CarrierFreq

double	Amplitude

double	PeakAmplitude

double	PeakAmplitudeFac

bool	StimScale

double	StimHighCut

WaveTypes	WaveType

WaveForms	WaveForm

double	Frequency

double	PulseDuration

double	DutyCycle

int	Seed

double	Ramp

double	Intensity

double	Duration

int	Side

int	Repeats

double	SkipWin

double	Sigma1

double	Sigma2

OutData	Signal

string	StimulusLabel

StoreLevels	StoreLevel

Str	StorePath

Str	StoreFile

OutData	AMDB

double	MeanRate

SampleDataD	Rate1

SampleDataD	Rate2

string	VUnit

MultiPlot	SP

MultiPlot	P

QStackedLayout *	Stack

Protected Attributes inherited from ConfigDialog
Options	DialogOptions

Additional Inherited Members
Public Types inherited from ConfigClass
enum	Action

Signals inherited from ConfigDialog
void	dialogAccepted (void)

void	dialogAction (int r)

void	dialogClosed (int r)

Static Public Member Functions inherited from ConfigClass
static void	setConfigureClasses (ConfigureClasses *cfg)

Protected Slots inherited from ConfigDialog
void	notificationFromDialog (const Parameter &p)

virtual void	dClosed (int r)

virtual void	hClosed (int r)

Static Protected Member Functions inherited from StandardTraces
static void	clearIndices (int *traceindices, int n=-1)

static void	initStandardTraces (const InList &data, int ntraces, int traceindices, const string *names, string &namelist, bool alpha=false)

static void	initStandardEventTraces (const InList &data, const EventList &events, int ntraces, int traceindices, int eventindices, const string tracenames, const string *eventnames, string &tracenamelist, string &eventnamelist, bool alpha=false)

static void	initStandardOutputs (const RELACSPlugin rp, int ntraces, int traceindices, const string names, string &namelist, bool alpha=false)

Static Protected Attributes inherited from StandardTraces
static const int	MaxTraces

Detailed Description

[RePro] Output of a single stimulus stored in a file.

Version: 1.6 (Jul 11, 2015)

Author: Jan Benda

Options

Waveform
- type=Wave: Type of stimulus (string)
- waveform=From file: Stimulus waveform (string)
- stimfile=: Stimulus file (string)
- stimscale=false: Scale stimulus to maximum amplitudes (boolean)
- stimhighcut=0Hz: Cutoff frequency of high-pass filter applied to stimulus (number)
- stimampl=0: Amplitude factor (standard deviation) of stimulus file (number)
- amplitude=1dB: Amplitude of stimulus (number)
- freqsel=frequency: Specify (string)
- freq=10Hz: Frequency of waveform (number)
- period=100ms: Period of waveform (number)
- numperiods=1: Number of periods (number)
- pulsesel=pulse duration: Specify (string)
- pulseduration=10ms: Pulse duration (number)
- dutycycle=50%: Duty-cycle (number)
- seed=0: Seed for random number generation (integer)
- duration=0ms: Maximum duration of stimulus (number)
- ramp=2ms: Ramp of stimulus (number)
Stimulus
- intensity=50dB: Stimulus intensity (number)
- intensitybase=SPL: Stimulus intensity relative to (string)
- repeats=10times: Number of stimulus presentations (number)
- pause=1000ms: Duration of pause between stimuli (number)
- before=100ms: Time before stimulus to be analyzed (number)
- after=100ms: Time after stimulus to be analyzed (number)
- side=left: Speaker (string)
- Carrier
  - carrierfreq=5kHz: Carrier frequency (number)
  - usebestfreq=true: Relative to the cell's best frequency (boolean)
Intensity - search
- userate=true: Search intensity for target firing rate (boolean)
- rate=100Hz: Target firing rate (number)
- ratetol=5Hz: Tolerance for target firing rate (number)
- intensitystep=8dB: Initial intensity step (number)
- searchrepeats=2times: Number of search stimulus presentations (number)
- silentrate=0Hz: Ignore response below (number)
- maxsilent=1: Number of stimulus presentations if response is below silentrate (integer)
- skippause=true: Skip pause if response is below silentrate (boolean)
- maxsearch=1intensities: Stop search if response does not change for more than (integer)
- method=Bisect: Method (string)
- minslope=4Hz/dB: Minimum slope required for interpolation (number)
- searchduration=0ms: Maximum duration of stimulus (number)
- searchpause=0ms: Duration of pause between stimuli (number)
Analysis
- skipwin=100ms: Initial portion of stimulus not used for analysis (number)
- sigma1=2ms: Standard deviation of rate smoothing kernel 1 (number)
- sigma2=20ms: Standard deviation of rate smoothing kernel 2 (number)
- storevoltage=false: Save voltage trace (boolean)
- plot=Current voltage trace: Plot shows (string)
- adjust=true: Adjust input gain (boolean)
- Save stimuli
  - storemode=session: Save stimuli in (string)
  - storepath=: Save stimuli in custom directory (string)
  - storelevel=all: Save (string)

Member Enumeration Documentation

enum WaveTypes

protected

Enumerator
Wave
Envelope
AM

enum WaveForms

protected

Enumerator
File
Const
Sine
Rectangular
Triangular
Sawup
Sawdown
Whitenoise
OUnoise

enum StoreModes

protected

Enumerator
SessionPath
ReProPath
CustomPath

enum StoreLevels

protected

Enumerator
All
AMGenerated
Generated
Noise
None

Constructor & Destructor Documentation

SingleStimulus ( void )

Constructor.

References SingleStimulus::Amplitude, SingleStimulus::CarrierFreq, SingleStimulus::Duration, SingleStimulus::Intensity, MultiPlot::lock(), SingleStimulus::P, SingleStimulus::Repeats, MultiPlot::resize(), MultiPlot::setCommonXRange(), SingleStimulus::Sigma1, SingleStimulus::Sigma2, SingleStimulus::SkipWin, SingleStimulus::SP, SingleStimulus::Stack, and MultiPlot::unlock().

~SingleStimulus ( void )

Destructor.

Member Function Documentation

void preConfig ( void )

virtual

Reimplemented from ConfigClass.

References SingleStimulus::VUnit.

int main ( void )

virtual

Implements RePro.

void openTraceFile	(	ofstream &	tf,
		TableKey &	tracekey,
		const Options &	header
	)

References TableKey::addNumber(), Str::lower(), TableKey::saveKey(), Str::text(), and SingleStimulus::VUnit.

Referenced by SingleStimulus::main().

void saveTrace	(	ofstream &	tf,
		TableKey &	tracekey,
		int	index,
		const SampleDataF &	voltage
	)

References SampleData< T >::pos(), TableKey::save(), and SampleData< T >::size().

Referenced by SingleStimulus::main().

void saveMeanTrace	(	Options &	header,
		const SampleDataF &	meanvoltage
	)

References TableKey::addNumber(), SingleStimulus::AMDB, OutData::interpolate(), Str::lower(), SampleData< T >::pos(), OutData::rangeBack(), TableKey::save(), TableKey::saveKey(), SampleData< T >::size(), Str::text(), and SingleStimulus::VUnit.

Referenced by SingleStimulus::main().

void saveSpikes	(	Options &	header,
		const EventList &	spikes
	)

References TableKey::addNumber(), Str::lower(), TableKey::saveKey(), EventList::saveText(), and Str::text().

Referenced by SingleStimulus::main().

void saveRate	(	Options &	header,
		const SampleDataD &	rate1,
		const SampleDataD &	rate2
	)

References TableKey::addNumber(), SingleStimulus::AMDB, OutData::interpolate(), Str::lower(), SampleData< T >::pos(), OutData::rangeBack(), TableKey::save(), TableKey::saveKey(), SingleStimulus::Sigma1, SingleStimulus::Sigma2, SampleData< T >::size(), and Str::text().

Referenced by SingleStimulus::main().

void plot	(	const EventList &	spikes,
		const SampleDataD &	rate1,
		const SampleDataD &	rate2,
		const SampleDataF &	voltage,
		const SampleDataF &	meanvoltage
	)

void analyze	(	EventList &	spikes,
		SampleDataD &	rate1,
		SampleDataD &	rate2,
		double	before,
		double	after
	)

Analyze data.

References EventData::addRate(), EventList::back(), SingleStimulus::Duration, SingleStimulus::MeanRate, EventList::push(), EventList::rate(), SingleStimulus::Sigma1, SingleStimulus::Sigma2, EventList::size(), and SingleStimulus::SkipWin.

Referenced by SingleStimulus::main().

void notifyDialog ( const Options & opt )

virtualslot

This slot is called whenever a value in the dialog is changed. The values of all the options opt from the dialog are set to the current values visible in the dialog. The changed value has the Parameter::changedFlag() set.