Auditory Relacs Plugins  0.9.8
Public Member Functions | Protected Attributes | List of all members
FIField Class Reference

#include <fifield.h>

Inheritance diagram for FIField:
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Collaboration diagram for FIField:
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Public Member Functions

 FIField (void)
 
 ~FIField (void)
 
virtual int main (void)
 
void saveHeader (const string &file)
 
void saveThreshold (const string &file)
 
void save (void)
 
virtual void plot (const vector< FIData > &results)
 
virtual DoneState next (vector< FIData > &results, bool msg=true)
 
- Public Member Functions inherited from FICurve
 FICurve (void)
 
 ~FICurve (void)
 
virtual void init (void)
 
- Public Member Functions inherited from ConfigDialog
 ConfigDialog (const string &configident="", int configgroup=0, const string &name="", const string &author="", const string &version="", const string &date=__DATE__)
 
virtual ~ConfigDialog (void)
 
string name (void) const
 
virtual void setName (const string &name)
 
string author (void) const
 
virtual void setAuthor (const string &author)
 
string version (void) const
 
virtual void setVersion (const string &version)
 
string date (void) const
 
virtual void setDate (const string &date)
 
virtual OptWidget * dialogOptions (OptDialog *od, string *tabhotkeys=0)
 
virtual void dialogButtons (OptDialog *od)
 
virtual void dialogEmptyMessage (OptDialog *od)
 
int dialogSelectMask (void) const
 
void setDialogSelectMask (int mask)
 
void addDialogSelectMask (int mask)
 
int dialogReadOnlyMask (void) const
 
void setDialogReadOnlyMask (int mask)
 
void addDialogReadOnlyMask (int mask)
 
int dialogStyle (void) const
 
void setDialogStyle (int style)
 
void addDialogStyle (int style)
 
string dialogCaption (void) const
 
void setDialogCaption (const string &caption)
 
bool dialogHeader (void) const
 
void setDialogHeader (bool d)
 
string headerBackgroundColor (void) const
 
void setHeaderBackgroundColor (const string &color)
 
string headerForegroundColor (void) const
 
void setHeaderForegroundColor (const string &color)
 
string headerImageFile (void) const
 
void setHeaderImageFile (const string &file)
 
virtual void dialogHeaderWidget (OptDialog *od)
 
bool dialogHelp (void) const
 
void setDialogHelp (bool d)
 
string helpCaption (void) const
 
void setHelpCaption (const string &caption)
 
string helpPath (int inx=0) const
 
int helpPathes (void) const
 
void clearHelpPathes (void)
 
void setHelpPath (const string &path)
 
void addHelpPath (const string &path)
 
virtual string helpFileName (void) const
 
bool dialogOpen (void) const
 
bool helpOpen (void) const
 
QWidget * mainWidget (void)
 
virtual void setMainWidget (QWidget *widget)
 
void lock () const
 
void unlock () const
 
bool tryLock (int timeout=1)
 
QMutex * mutex (void)
 
- Public Member Functions inherited from ConfigClass
 ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0)
 
 ConfigClass (const ConfigClass &C)
 
virtual ~ConfigClass (void)
 
const string & configIdent (void) const
 
void setConfigIdent (const string &ident)
 
int configGroup (void) const
 
void setConfigGroup (int group)
 
int configMode (void) const
 
void setConfigMode (int mode)
 
void addConfigMode (int mode)
 
void delConfigMode (int mode)
 
int configSelectMask (void) const
 
void setConfigSelectMask (int mask)
 
void addConfig (void)
 
void readConfig (void)
 
virtual void readConfig (StrQueue &sq)
 
virtual void saveConfig (ofstream &str)
 
virtual int configSize (void) const
 
virtual void config (void)
 
virtual void preConfig (void)
 
- Public Member Functions inherited from StandardTraces
 StandardTraces (void)
 

Protected Attributes

double MinFreq
 
double MaxFreq
 
double FreqStep
 
double FreqFac
 
string FreqStr
 
RangeLoop::Sequence FreqShuffle
 
int FreqIncrement
 
RangeLoop FrequencyRange
 
int ReducedFreqIncrement
 
int ReducedFreqNumber
 
vector< ThreshData > FieldData
 
int BestIndex
 
MapD BestFICurve
 
MapD BestOnFICurve
 
MapD BestSSFICurve
 
double MinRateFrac
 
double MaxRate
 
Options FIFieldHeader
 
- Protected Attributes inherited from FICurve
double MinIntensity
 
double MaxIntensity
 
double IntensityStep
 
bool UseThresh
 
bool UseSaturation
 
RangeLoop::Sequence IntShuffle
 
int IntIncrement
 
int SingleRepeat
 
int IntBlockRepeat
 
int IntRepeat
 
double CarrierFrequency
 
bool UseBestFreq
 
int Waveform
 
double Ramp
 
int Side
 
double Duration
 
double Pause
 
bool SkipPause
 
int SkipSilentIncrement
 
int SlopeIntIncrement
 
double MinRateSlope
 
double MaxRateFrac
 
double IntensityExtension
 
bool UseSilent
 
double MaxBaseRate
 
int MaxSilent
 
double SilentFactor
 
int ResetSilent
 
double RateDt
 
double PreWidth
 
double PeakWidth
 
double SSWidth
 
bool PlotOnSSRate
 
bool AdjustGain
 
bool SetBest
 
int SetCurves
 
RangeLoop IntensityRange
 
double Intensity
 
OutData Signal
 
double MeanIntensity
 
double MinCarrierFrequency
 
int FICurveStops
 
int NSilent
 
double SilentRate
 
double LastSilentRate
 
double SilentRateSq
 
double SilentRateSD
 
double MaxSilentRate
 
double MaxPlotRate
 
MultiPlot P
 
bool PlotIntensitySelection
 
Options Header
 
ThreshData Threshold
 
- Protected Attributes inherited from ConfigDialog
Options DialogOptions
 

Additional Inherited Members

- Public Types inherited from ConfigClass
enum  Action
 
- Public Slots inherited from ConfigDialog
virtual void dialog (void)
 
virtual void help (void)
 
virtual void notifyDialog (const Options &opt)
 
- Signals inherited from ConfigDialog
void dialogAccepted (void)
 
void dialogAction (int r)
 
void dialogClosed (int r)
 
- Static Public Member Functions inherited from ConfigClass
static void setConfigureClasses (ConfigureClasses *cfg)
 
- Protected Slots inherited from FICurve
void plotMouseEvent (Plot::MouseEvent &me)
 
- Protected Slots inherited from ConfigDialog
void notificationFromDialog (const Parameter &p)
 
virtual void dClosed (int r)
 
virtual void hClosed (int r)
 
- Protected Member Functions inherited from FICurve
virtual void customEvent (QEvent *qce)
 
void saveSpikes (const string &file, const vector< FIData > &results)
 
void saveRates (const string &file, const vector< FIData > &results)
 
void saveFICurve (const string &file, const vector< FIData > &results)
 
void analyzeFICurve (const vector< FIData > &results, double minrate=0.0)
 
void setHeader (void)
 
void updateSession (const vector< FIData > &results)
 
void save (const vector< FIData > &results)
 
void plotIntensitySelection (void)
 
virtual void analyze (vector< FIData > &results)
 
int loop (vector< FIData > &results)
 
void silentActivity (void)
 
void resetSilentActivity (void)
 
- Protected Member Functions inherited from ConfigDialog
void setDialogOpen (bool open=true)
 
void setHelpOpen (bool open=true)
 
- Static Protected Member Functions inherited from StandardTraces
static void clearIndices (int *traceindices, int n=-1)
 
static void initStandardTraces (const InList &data, int *ntraces, int *traceindices, const string *names, string &namelist, bool alpha=false)
 
static void initStandardEventTraces (const InList &data, const EventList &events, int *ntraces, int *traceindices, int *eventindices, const string *tracenames, const string *eventnames, string &tracenamelist, string &eventnamelist, bool alpha=false)
 
static void initStandardOutputs (const RELACSPlugin *rp, int *ntraces, int *traceindices, const string *names, string &namelist, bool alpha=false)
 
- Static Protected Attributes inherited from StandardTraces
static const int MaxTraces
 

Detailed Description

[RePro] Optimized measuring of f-I curves for a range of carrier frequencies.

Version
1.6 (Jul 18, 2014)
Author
Jan Benda
Options
  • Intensities
    • intmin=30dB SPL: Minimum stimulus intensity (number)
    • intmax=100dB SPL: Maximum stimulus intensity (number)
    • intstep=1dB SPL: Sound intensity step (number)
    • usethresh=false: Relative to the cell's threshold (boolean)
    • usesat=false: Maximum intensity relative to the cell's best saturation (boolean)
    • useprevints=no: Re-use intensities from the previous run (string)
    • intshuffle=Up: Order of intensities (string)
    • intincrement=0: Initial increment for intensities (integer)
    • singlerepeat=6: Number of immediate repetitions of a single stimulus (integer)
    • blockrepeat=1: Number of repetitions of a fixed intensity increment (integer)
    • repeats=1: Number of repetitions of the whole f-I curve measurement (integer)
    • manualskip=false: Show buttons for manual selection of intensities (boolean)
  • Waveform
    • waveform=sine: Waveform of stimulus (string)
    • carrierfreq=5kHz: Frequency of carrier (number)
    • usebestfreq=false: Relative to the cell's best frequency (boolean)
    • ramp=2ms: Ramp of stimulus (number)
    • duration=400ms: Duration of stimulus (number)
    • pause=400ms: Pause (number)
    • side=left: Speaker (string)
  • Optimization
    • Baseline activity
      • usesilent=false: Use measured baseline activity (boolean)
      • maxbaserate=10Hz: Maximum baseline activity (number)
      • maxsilent=100: Maximum trials used for baseline activity (integer)
      • resetsilent=Never: Reset estimation of baseline activity at (string)
      • silentfactor=3: Weight for standard deviation of baseline activity (number)
    • No response
      • skippause=true: Skip pause if there is no response (boolean)
      • silentintincrement=1: Skip all stimuli below not responding ones
        at intensity increments below (integer)
    • Slope
      • slopeintincrement=2: Optimize slopes at intensity increments below (integer)
      • minrateslope=0Hz/dB: Minimum slope of firing rate (number)
      • maxratefrac=100%: Fraction of maximum firing rate above which slopes are optimized (number)
      • extint=0dB SPL: Extend intensity range by (number)
  • Analysis
    • ratedt=1ms: Bin width for firing rate (number)
    • prewidth=50ms: Window length for baseline firing rate (number)
    • peakwidth=100ms: Window length for peak firing rate (number)
    • sswidth=50ms: Window length for steady-state firing rate (number)
    • plotonssrate=true: Plot onset- and steady-state rate (boolean)
    • adjust=true: Adjust input gain (boolean)
    • setbest=true: Set results to the session variables (boolean)
    • setcurves=none: F-I curves to be passed to session (string)
Plots
The left plot shows the sensitivity of the cell as a function of carrier frequency. At each carrier frequency a straight line is fitted into the dynamic range of the f-I curve. The intersection of this line with zero is the threshold of the cell (yellow line). The intersection with the maximum firing rate of the f-I curve is the red line, and the intersection with the "best rate" from the session dialog is the orange line.

The right plot shows the f-I curve of the currently measured carrier frequency. Cyan is the firing rate before the stimulus, orange is the mean firing rate (spike count divided by stimulus duration), red is the steady-state firing rate, and green is the onset spike frequency (mean max spike frequency).

Constructor & Destructor Documentation

FIField ( void  )

Constructor.

References RangeLoop::sequenceStrings(), and RangeLoop::Up.

~FIField ( void  )

Destructor.

Member Function Documentation

int main ( void  )
virtual

Read options, create stimulus and start output of stimuli.

Reimplemented from FICurve.

References Plot::AutoMinScale, Plot::AutoScale, Parameter::Section, and DaqError::Unknown.

void saveHeader ( const string &  file)
void saveThreshold ( const string &  file)

References TableKey::addNumber(), TableKey::newSection(), TableKey::save(), and TableKey::saveKey().

void save ( void  )

References Session::addFICurve(), Session::addOnFICurve(), Session::addSSFICurve(), Session::addThreshCurve(), Map< T >::push(), and Session::updateBestSide().

void plot ( const vector< FIData > &  results)
virtual

Plot data.

Reimplemented from FICurve.

References Plot::Circle, Plot::Cyan, Plot::Green, Plot::Orange, Map< T >::push(), Plot::Red, Plot::Solid, Plot::Transparent, Plot::White, and Plot::Yellow.

RePro::DoneState next ( vector< FIData > &  results,
bool  msg = true 
)
virtual

Set next stimulus.

Reimplemented from FICurve.

References DaqError::Unknown.

Member Data Documentation

double MinFreq
protected
double MaxFreq
protected
double FreqStep
protected
double FreqFac
protected
string FreqStr
protected
RangeLoop::Sequence FreqShuffle
protected
int FreqIncrement
protected
RangeLoop FrequencyRange
protected
int ReducedFreqIncrement
protected
int ReducedFreqNumber
protected
vector< ThreshData > FieldData
protected
int BestIndex
protected
MapD BestFICurve
protected
MapD BestOnFICurve
protected
MapD BestSSFICurve
protected
double MinRateFrac
protected
double MaxRate
protected
Options FIFieldHeader
protected
The documentation for this class was generated from the following files:
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