TraubErmentrout1998 Class Reference

#include <spikingneuron.h>

Inheritance diagram for TraubErmentrout1998:

Collaboration diagram for TraubErmentrout1998:

Public Member Functions
	TraubErmentrout1998 (void)
virtual string	name (void) const
virtual void	operator() (double t, double s, double *x, double *dxdt, int n)
virtual void	init (double *x) const
virtual void	add (void)
virtual void	notify (void)
Public Member Functions inherited from TraubErmentrout
	TraubErmentrout (void)
virtual int	dimension (void) const
virtual void	variables (vector< string > &varnames) const
virtual void	units (vector< string > &u) const
virtual void	conductances (vector< string > &conductancenames) const
virtual void	conductances (double *g) const
virtual void	currents (vector< string > &currentnames) const
virtual void	currents (double *c) const
Public Member Functions inherited from HodgkinHuxley
	HodgkinHuxley (void)
Public Member Functions inherited from SpikingNeuron
	SpikingNeuron (void)
virtual	~SpikingNeuron (void)
virtual string	conductanceUnit (void) const
virtual string	currentUnit (void) const
virtual string	inputUnit (void) const
double	gain (void) const
double	offset (void) const
Public Member Functions inherited from ConfigClass
	ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0)
	ConfigClass (const ConfigClass &C)
virtual	~ConfigClass (void)
const string &	configIdent (void) const
void	setConfigIdent (const string &ident)
int	configGroup (void) const
void	setConfigGroup (int group)
int	configMode (void) const
void	setConfigMode (int mode)
void	addConfigMode (int mode)
void	delConfigMode (int mode)
int	configSelectMask (void) const
void	setConfigSelectMask (int mask)
void	addConfig (void)
void	readConfig (void)
virtual void	readConfig (StrQueue &sq)
virtual void	saveConfig (ofstream &str)
virtual int	configSize (void) const
virtual void	config (void)
virtual void	preConfig (void)

Protected Attributes
double	TauW
Protected Attributes inherited from TraubErmentrout
double	GCa
double	GM
double	GAHP
double	GCaGates
double	GMGates
double	GAHPGates
double	ECa
double	EM
double	EAHP
double	ICa
double	IM
double	IAHP
Protected Attributes inherited from HodgkinHuxley
double	C
double	PT
double	ENa
double	EK
double	EL
double	GNa
double	GK
double	GL
double	GNaGates
double	GKGates
double	INa
double	IK
double	IL
Protected Attributes inherited from SpikingNeuron
double	Gain
double	Offset

Additional Inherited Members
Public Types inherited from ConfigClass
enum	Action
Static Public Member Functions inherited from ConfigClass
static void	setConfigureClasses (ConfigureClasses *cfg)
Static Public Attributes inherited from SpikingNeuron
static const int	ScalingFlag = 16
static const int	ModelFlag = 32
static const int	DescriptionFlag = 64

Detailed Description

[ModelLib] The single compartment model with adaptation currents as used in Ermentrout (1998)

Author

Jan Benda

This is Traub's 1991 model for spiking dynamics with M-type, calcium, and AHP-type currents as used in Ermentrout (1998).

Roger D. Traub and Richard Miles (1991): Neural networks of the hippocampus. Cambridge: Cambridge University Press

Bard Ermentrout (1998): Linearization of f-I curves by adaptation. Neural. Comput. 10, pp. 1721-1729

Constructor & Destructor Documentation

TraubErmentrout1998

(

void

)

References HodgkinHuxley::C, TraubErmentrout::EAHP, TraubErmentrout::ECa, HodgkinHuxley::EK, HodgkinHuxley::EL, TraubErmentrout::EM, HodgkinHuxley::ENa, TraubErmentrout::GAHP, TraubErmentrout::GAHPGates, TraubErmentrout::GCa, TraubErmentrout::GCaGates, HodgkinHuxley::GK, HodgkinHuxley::GKGates, HodgkinHuxley::GL, TraubErmentrout::GM, TraubErmentrout::GMGates, HodgkinHuxley::GNa, HodgkinHuxley::GNaGates, TraubErmentrout::IAHP, TraubErmentrout::ICa, HodgkinHuxley::IK, HodgkinHuxley::IL, TraubErmentrout::IM, HodgkinHuxley::INa, HodgkinHuxley::PT, and TraubErmentrout1998::TauW.

Member Function Documentation

string name ( void  ) const

virtual

Returns

the name of the model.

Reimplemented from HodgkinHuxley.

void operator() ( double  t, double  s, double *  x, double *  dxdt, int  n  )

virtual

Computes the derivative dxdt at time t with stimulus s given the state x.

Reimplemented from HodgkinHuxley.

References HodgkinHuxley::C, TraubErmentrout::EAHP, TraubErmentrout::ECa, HodgkinHuxley::EK, HodgkinHuxley::EL, TraubErmentrout::EM, HodgkinHuxley::ENa, relacs::exp(), TraubErmentrout::GAHP, TraubErmentrout::GAHPGates, TraubErmentrout::GCa, TraubErmentrout::GCaGates, HodgkinHuxley::GK, HodgkinHuxley::GKGates, HodgkinHuxley::GL, TraubErmentrout::GM, TraubErmentrout::GMGates, HodgkinHuxley::GNa, HodgkinHuxley::GNaGates, TraubErmentrout::IAHP, TraubErmentrout::ICa, HodgkinHuxley::IK, HodgkinHuxley::IL, TraubErmentrout::IM, HodgkinHuxley::INa, and TraubErmentrout1998::TauW.

void init ( double *  x ) const

virtual

Initialize the state x with usefull inital conditions.

Reimplemented from HodgkinHuxley.

void add ( void  )

virtual

Add parameters as options.

Reimplemented from TraubErmentrout.

References TraubErmentrout::add(), SpikingNeuron::ModelFlag, and TraubErmentrout1998::TauW.

void notify ( void  )

virtual

Read out the current values from the list of Options.

Reimplemented from TraubErmentrout.

References TraubErmentrout::notify(), and TraubErmentrout1998::TauW.

Member Data Documentation

double TauW

protected

Referenced by TraubErmentrout1998::add(), TraubErmentrout1998::notify(), TraubErmentrout1998::operator()(), and TraubErmentrout1998::TraubErmentrout1998().

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The documentation for this class was generated from the following files:

• spikingneuron.h
• spikingneuron.cc