#include <spikingneuron.h>

Inheritance diagram for TraubErmentrout:

Collaboration diagram for TraubErmentrout:

Public Member Functions
	TraubErmentrout (void)

virtual int	dimension (void) const

virtual void	variables (vector< string > &varnames) const

virtual void	units (vector< string > &u) const

virtual void	conductances (vector< string > &conductancenames) const

virtual void	conductances (double *g) const

virtual void	currents (vector< string > &currentnames) const

virtual void	currents (double *c) const

virtual void	add (void)

virtual void	notify (void)

Public Member Functions inherited from HodgkinHuxley
	HodgkinHuxley (void)

virtual string	name (void) const

virtual void	operator() (double t, double s, double x, double dxdt, int n)

virtual void	init (double *x) const

Public Member Functions inherited from SpikingNeuron
	SpikingNeuron (void)

virtual	~SpikingNeuron (void)

virtual string	conductanceUnit (void) const

virtual string	currentUnit (void) const

virtual string	inputUnit (void) const

double	gain (void) const

double	offset (void) const

Public Member Functions inherited from ConfigClass
	ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0)

	ConfigClass (const ConfigClass &C)

virtual	~ConfigClass (void)

const string &	configIdent (void) const

void	setConfigIdent (const string &ident)

int	configGroup (void) const

void	setConfigGroup (int group)

int	configMode (void) const

void	setConfigMode (int mode)

void	addConfigMode (int mode)

void	delConfigMode (int mode)

int	configSelectMask (void) const

void	setConfigSelectMask (int mask)

void	addConfig (void)

void	readConfig (void)

virtual void	readConfig (StrQueue &sq)

virtual void	saveConfig (ofstream &str)

virtual int	configSize (void) const

virtual void	config (void)

virtual void	preConfig (void)

Protected Attributes
double	GCa

double	GM

double	GAHP

double	GCaGates

double	GMGates

double	GAHPGates

double	ECa

double	EM

double	EAHP

double	ICa

double	IM

double	IAHP

Protected Attributes inherited from HodgkinHuxley
double	C

double	PT

double	ENa

double	EK

double	EL

double	GNa

double	GK

double	GL

double	GNaGates

double	GKGates

double	INa

double	IK

double	IL

Protected Attributes inherited from SpikingNeuron
double	Gain

double	Offset

Additional Inherited Members
Public Types inherited from ConfigClass
enum	Action

Static Public Member Functions inherited from ConfigClass
static void	setConfigureClasses (ConfigureClasses *cfg)

Static Public Attributes inherited from SpikingNeuron
static const int	ScalingFlag = 16

static const int	ModelFlag = 32

static const int	DescriptionFlag = 64

Detailed Description

[ModelLib] Base class for Traub-Miles (1991) based models with M-type, calcium, and AHP-type currents

Author: Jan Benda

This is the base class for the models used in Ermentrout (1998) and Ermentrout et al. (2001) that are based on Traub's 1991 model for spiking dynamics with M-type, calcium, and AHP-type currents.

Bard Ermentrout (1998): Linearization of f-I curves by adaptation. Neural. Comput. 10, pp. 1721-1729

Bard Ermentrout, Matthew Pascal, and Boris Gutkin (2001): The effects of spike frequency adaptation and negative feedback on the synchronization of neural osscillators. Neural. Comput. 13, pp. 1285-1310

Roger D. Traub and Richard Miles (1991): Neural networks of the hippocampus. Cambridge: Cambridge University Press

Constructor & Destructor Documentation

Member Function Documentation

int dimension ( void ) const

virtual

Returns: the dimension of the system.

See Also: variables(), operator()()

Reimplemented from HodgkinHuxley.

Referenced by TraubErmentrout::units(), and TraubErmentrout::variables().

void variables ( vector< string > & varnames ) const

virtual

Parameters

[out] varnames the names of each of the dimension() variables. Gating variables (ranging between 0 and 1) should be a single lower-case character, potentials and equivalent potentials a single upper-case character, and concentrations should be in brackets (e.g. [Ca]).

See Also: dimension(), units(), operator()()

Reimplemented from HodgkinHuxley.

References TraubErmentrout::dimension().

void units ( vector< string > & u ) const

virtual

Parameters

[out] u the units of the variables returned by variables().

See Also: dimension(), operator()()

Reimplemented from HodgkinHuxley.

References TraubErmentrout::dimension().

void conductances ( vector< string > & conductancenames ) const

virtual

Returns in conductancenames the names of the individual ionic conductances that conductances(double*) const would return.

Reimplemented from HodgkinHuxley.

void conductances ( double * g ) const

virtual

Returns in g the values of the individual ionic conductances. The number of conductances is defined by the size of conductancenames the function conductances(vector<string>&) const returns.

Reimplemented from HodgkinHuxley.

References TraubErmentrout::GAHPGates, TraubErmentrout::GCaGates, HodgkinHuxley::GKGates, HodgkinHuxley::GL, TraubErmentrout::GMGates, and HodgkinHuxley::GNaGates.

void currents ( vector< string > & currentnames ) const

virtual

Returns in currentnames the names of the individual ionic currents that currents(double*) const would return.

Reimplemented from HodgkinHuxley.

void currents ( double * c ) const

virtual

Returns in c the values of the individual ionic currents. The number of currents is defined by the size of currentnames the function currents(vector<string>&) const returns.

Reimplemented from HodgkinHuxley.

References TraubErmentrout::IAHP, TraubErmentrout::ICa, HodgkinHuxley::IK, HodgkinHuxley::IL, TraubErmentrout::IM, and HodgkinHuxley::INa.