efish Relacs Plugins  0.9.8
Public Member Functions | List of all members
SAM Class Reference

#include <sam.h>

Inheritance diagram for SAM:
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Collaboration diagram for SAM:
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Public Member Functions

 SAM (void)
 
virtual int main (void)
 
void stop (void)
 
void saveRate (int trace)
 
void saveAmpl (void)
 
void saveAllAmpl (void)
 
void saveSpikes (int trace)
 
void saveAllSpikes (int trace)
 
void saveNerve (void)
 
void saveAllNerve (void)
 
virtual void save (void)
 
void plot (void)
 
void analyzeSpikes (const EventData &se, int k, const EventData &beattimes)
 
void analyze (void)
 
- Public Member Functions inherited from ConfigDialog
 ConfigDialog (const string &configident="", int configgroup=0, const string &name="", const string &author="", const string &version="", const string &date=__DATE__)
 
virtual ~ConfigDialog (void)
 
string name (void) const
 
virtual void setName (const string &name)
 
string author (void) const
 
virtual void setAuthor (const string &author)
 
string version (void) const
 
virtual void setVersion (const string &version)
 
string date (void) const
 
virtual void setDate (const string &date)
 
virtual OptWidget * dialogOptions (OptDialog *od, string *tabhotkeys=0)
 
virtual void dialogButtons (OptDialog *od)
 
virtual void dialogEmptyMessage (OptDialog *od)
 
int dialogSelectMask (void) const
 
void setDialogSelectMask (int mask)
 
void addDialogSelectMask (int mask)
 
int dialogReadOnlyMask (void) const
 
void setDialogReadOnlyMask (int mask)
 
void addDialogReadOnlyMask (int mask)
 
int dialogStyle (void) const
 
void setDialogStyle (int style)
 
void addDialogStyle (int style)
 
string dialogCaption (void) const
 
void setDialogCaption (const string &caption)
 
bool dialogHeader (void) const
 
void setDialogHeader (bool d)
 
string headerBackgroundColor (void) const
 
void setHeaderBackgroundColor (const string &color)
 
string headerForegroundColor (void) const
 
void setHeaderForegroundColor (const string &color)
 
string headerImageFile (void) const
 
void setHeaderImageFile (const string &file)
 
virtual void dialogHeaderWidget (OptDialog *od)
 
bool dialogHelp (void) const
 
void setDialogHelp (bool d)
 
string helpCaption (void) const
 
void setHelpCaption (const string &caption)
 
string helpPath (int inx=0) const
 
int helpPathes (void) const
 
void clearHelpPathes (void)
 
void setHelpPath (const string &path)
 
void addHelpPath (const string &path)
 
virtual string helpFileName (void) const
 
bool dialogOpen (void) const
 
bool helpOpen (void) const
 
QWidget * mainWidget (void)
 
virtual void setMainWidget (QWidget *widget)
 
void lock () const
 
void unlock () const
 
bool tryLock (int timeout=1)
 
QMutex * mutex (void)
 
- Public Member Functions inherited from ConfigClass
 ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0)
 
 ConfigClass (const ConfigClass &C)
 
virtual ~ConfigClass (void)
 
const string & configIdent (void) const
 
void setConfigIdent (const string &ident)
 
int configGroup (void) const
 
void setConfigGroup (int group)
 
int configMode (void) const
 
void setConfigMode (int mode)
 
void addConfigMode (int mode)
 
void delConfigMode (int mode)
 
int configSelectMask (void) const
 
void setConfigSelectMask (int mask)
 
void addConfig (void)
 
void readConfig (void)
 
virtual void readConfig (StrQueue &sq)
 
virtual void saveConfig (ofstream &str)
 
virtual int configSize (void) const
 
virtual void config (void)
 
virtual void preConfig (void)
 

Additional Inherited Members

- Public Types inherited from ConfigClass
enum  Action
 
- Public Slots inherited from ConfigDialog
virtual void dialog (void)
 
virtual void help (void)
 
virtual void notifyDialog (const Options &opt)
 
- Signals inherited from ConfigDialog
void dialogAccepted (void)
 
void dialogAction (int r)
 
void dialogClosed (int r)
 
- Static Public Member Functions inherited from ConfigClass
static void setConfigureClasses (ConfigureClasses *cfg)
 
- Protected Slots inherited from ConfigDialog
void notificationFromDialog (const Parameter &p)
 
virtual void dClosed (int r)
 
virtual void hClosed (int r)
 
- Protected Member Functions inherited from ConfigDialog
void setDialogOpen (bool open=true)
 
void setHelpOpen (bool open=true)
 
- Protected Attributes inherited from ConfigDialog
Options DialogOptions
 

Detailed Description

[RePro] Measures responses to sinusoidal amplitude modulations.

Author
Jan Benda
Version
2.4 (Dec 10, 2014)
Options
Options
  • Stimulus
    • duration=1000ms: Duration of signal (number)
    • pause=1000ms: Pause between signals (number)
    • freqsel=relative to EOD: Stimulus frequency is (string)
    • deltaf=5Hz: Delta f (beat frequency) (number)
    • contrast=20%: Contrast (number)
    • repeats=6: Repeats (integer)
    • am=true: Amplitude modulation (boolean)
    • sinewave=true: Use sine wave (boolean)
    • ampl=0.0: Relative amplitude of harmonics (string)
    • phase=0.0: Phase of harmonics (string)
    • contrastsel=fundamental: Contrast is (string)
  • Analysis
    • skip=0.5Periods: Skip (number)
    • ratebins=10: Number of bins for firing rate (integer)
    • before=0ms: Spikes recorded before stimulus (number)
    • after=0ms: Spikes recorded after stimulus (number)
    • adjust=true: Adjust input gain? (boolean)

Harmonics can be defined by ampl and phase. Enter the relative amplitude and the corresponding phase of each harmonic as comma separated values.

Files
  • samspikes#.dat : the spikes elicited by each SAM period of trace #.
  • samallspikes#.dat : the spikes elicited by each SAM stimulus of trace #.
  • samnerveampl.dat : the nerve potential elicited by each SAM period.
  • samnervesmoothampl.dat : the smoothed nerve potential elicited by each SAM period.
  • samallnerveampl.dat : the nerve potential elicited by each SAM stimulus.
  • samallnervesmoothampl.dat : the smoothed nerve potential elicited by each SAM stimulus.
  • samampl.dat : the SAM amplitudes for each SAM period.
  • samallampl.dat : the SAM amplitude for each stimulus.
  • samrate#.dat : the cyclic firing rate for a single SAM period of trace #.
Plots
  • Firing Rate: Spikes (red) and cyclic firing rate (yellow) for each SAM cycle.
  • SAM: Each period of the SAM stimulus (darkgreen). Last period green.
Requirements
  • Transdermal EOD recording (EODTrace2) and events (EODEvents2).
  • Recording of the stimulus events (SignalEvents1) if non AM stimuli are used.
  • One or more spike events (SpikeEvents[*]) or nerve recordings (NerveTrace1).

Constructor & Destructor Documentation

SAM ( void  )

References TableKey::addNumber(), SampleData< T >::clear(), Map< T >::clear(), and TableKey::newSection().

Member Function Documentation

int main ( void  )
virtual

Implements RePro.

References SAM::analyze(), DaqError::busy(), MultiPlot::clear(), MultiPlot::draw(), OutData::duration(), DaqError::error(), DaqError::errorText(), EventData::frequency(), OutData::intensity(), MultiPlot::lock(), DaqError::OverflowUnderrun, SAM::plot(), Str::range(), Map< T >::reserve(), MultiPlot::resize(), SAM::save(), SAM::saveAllAmpl(), SAM::saveAllNerve(), SAM::saveAllSpikes(), SAM::saveAmpl(), SAM::saveNerve(), SAM::saveSpikes(), MultiPlot::setCommonXRange(), MultiPlot::setCommonYRange(), OutData::setIntensity(), OutData::setPriority(), OutData::setStartSource(), SAM::stop(), DaqError::success(), and MultiPlot::unlock().

void stop ( void  )

References SampleData< T >::clear(), Map< T >::free(), and SampleData< T >::free().

Referenced by SAM::main().

void saveRate ( int  trace)

References TableKey::addNumber(), TableKey::save(), TableKey::saveKey(), and SampleData< T >::size().

Referenced by SAM::save().

void saveAmpl ( void  )

References TableKey::save(), TableKey::saveKey(), and TableKey::setUnit().

Referenced by SAM::main().

void saveAllAmpl ( void  )

References TableKey::save(), TableKey::saveKey(), TableKey::setUnit(), Map< T >::size(), Map< T >::x(), and Map< T >::y().

Referenced by SAM::main().

void saveSpikes ( int  trace)

References TableKey::save(), and TableKey::saveKey().

Referenced by SAM::main().

void saveAllSpikes ( int  trace)

References TableKey::save(), and TableKey::saveKey().

Referenced by SAM::main().

void saveNerve ( void  )

References TableKey::save(), and TableKey::saveKey().

Referenced by SAM::main().

void saveAllNerve ( void  )

References SampleData< T >::pos(), TableKey::save(), TableKey::saveKey(), Map< T >::size(), SampleData< T >::size(), and Map< T >::x().

Referenced by SAM::main().

void save ( void  )
virtual

Save results data.

References SAM::saveRate().

Referenced by SAM::main().

void plot ( void  )

Plot data.

References MultiPlot::clear(), MultiPlot::draw(), MultiPlot::lock(), and MultiPlot::unlock().

Referenced by SAM::main().

void analyzeSpikes ( const EventData &  se,
int  k,
const EventData &  beattimes 
)

Analyze spikes.

References EventData::addFrequency(), EventData::addRate(), EventData::copy(), max(), and EventData::size().

Referenced by SAM::analyze().

void analyze ( void  )

Analyze data.

References SAM::analyzeSpikes(), average(), EventList::back(), EventData::begin(), InData::begin(), Map< T >::clear(), EventData::count(), OutData::duration(), InData::end(), EventData::frequency(), EventList::front(), Detector< DataIter, TimeIter >::init(), EventData::interval(), max(), InData::max(), InData::mean(), min(), InData::min(), Detector< DataIter, TimeIter >::peakTrough(), SampleData< T >::pos(), EventData::previous(), Map< T >::push(), EventData::push(), Map< T >::reserve(), Map< T >::size(), SampleData< T >::size(), EventData::size(), EventList::size(), InData::stdev(), EventIterator::time(), InData::timeBegin(), EventData::within(), and Map< T >::x().

Referenced by SAM::main().

The documentation for this class was generated from the following files:
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