FileStimulus Class Reference

#include <filestimulus.h>

Inheritance diagram for FileStimulus:

Collaboration diagram for FileStimulus:

Public Member Functions
	FileStimulus (void)
virtual int	main (void)
void	stop (void)
void	saveRate (int trace)
void	savePower (int trace)
void	saveAmpl (void)
void	saveNerve (void)
void	saveNervePower (void)
void	saveSpikes (int trace)
void	saveNoise (int trace, int trial, const OutData &noisesignal, const OutData &signal, double noisefac, const OutData &noise)
void	save (void)
void	plot (void)
void	analyzeSpikes (const EventData &se, int k)
void	analyze (void)
Public Member Functions inherited from ConfigDialog
	ConfigDialog (const string &configident="", int configgroup=0, const string &name="", const string &author="", const string &version="", const string &date=__DATE__)
virtual	~ConfigDialog (void)
string	name (void) const
virtual void	setName (const string &name)
string	author (void) const
virtual void	setAuthor (const string &author)
string	version (void) const
virtual void	setVersion (const string &version)
string	date (void) const
virtual void	setDate (const string &date)
virtual OptWidget *	dialogOptions (OptDialog *od, string *tabhotkeys=0)
virtual void	dialogButtons (OptDialog *od)
virtual void	dialogEmptyMessage (OptDialog *od)
int	dialogSelectMask (void) const
void	setDialogSelectMask (int mask)
void	addDialogSelectMask (int mask)
int	dialogReadOnlyMask (void) const
void	setDialogReadOnlyMask (int mask)
void	addDialogReadOnlyMask (int mask)
int	dialogStyle (void) const
void	setDialogStyle (int style)
void	addDialogStyle (int style)
string	dialogCaption (void) const
void	setDialogCaption (const string &caption)
bool	dialogHeader (void) const
void	setDialogHeader (bool d)
string	headerBackgroundColor (void) const
void	setHeaderBackgroundColor (const string &color)
string	headerForegroundColor (void) const
void	setHeaderForegroundColor (const string &color)
string	headerImageFile (void) const
void	setHeaderImageFile (const string &file)
virtual void	dialogHeaderWidget (OptDialog *od)
bool	dialogHelp (void) const
void	setDialogHelp (bool d)
string	helpCaption (void) const
void	setHelpCaption (const string &caption)
string	helpPath (int inx=0) const
int	helpPathes (void) const
void	clearHelpPathes (void)
void	setHelpPath (const string &path)
void	addHelpPath (const string &path)
virtual string	helpFileName (void) const
bool	dialogOpen (void) const
bool	helpOpen (void) const
QWidget *	mainWidget (void)
virtual void	setMainWidget (QWidget *widget)
void	lock () const
void	unlock () const
bool	tryLock (int timeout=1)
QMutex *	mutex (void)
Public Member Functions inherited from ConfigClass
	ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0)
	ConfigClass (const ConfigClass &C)
virtual	~ConfigClass (void)
const string &	configIdent (void) const
void	setConfigIdent (const string &ident)
int	configGroup (void) const
void	setConfigGroup (int group)
int	configMode (void) const
void	setConfigMode (int mode)
void	addConfigMode (int mode)
void	delConfigMode (int mode)
int	configSelectMask (void) const
void	setConfigSelectMask (int mask)
void	addConfig (void)
void	readConfig (void)
virtual void	readConfig (StrQueue &sq)
virtual void	saveConfig (ofstream &str)
virtual int	configSize (void) const
virtual void	config (void)
virtual void	preConfig (void)

Additional Inherited Members
Public Types inherited from ConfigClass
enum	Action
Public Slots inherited from ConfigDialog
virtual void	dialog (void)
virtual void	help (void)
virtual void	notifyDialog (const Options &opt)
Signals inherited from ConfigDialog
void	dialogAccepted (void)
void	dialogAction (int r)
void	dialogClosed (int r)
Static Public Member Functions inherited from ConfigClass
static void	setConfigureClasses (ConfigureClasses *cfg)
Protected Slots inherited from ConfigDialog
void	notificationFromDialog (const Parameter &p)
virtual void	dClosed (int r)
virtual void	hClosed (int r)
Protected Member Functions inherited from ConfigDialog
void	setDialogOpen (bool open=true)
void	setHelpOpen (bool open=true)
Protected Attributes inherited from ConfigDialog
Options	DialogOptions

Detailed Description

[RePro] Load a stimulus from a text file.

Author

Jan Benda

Version

1.3 (Mar 25, 2010)

Options

• filepath (string): The directory of the stimulus file.
• filename (string): The stimulus file.
• sigstdev (number): The standard deviation of the stimulus.
• pause (number, ms): Pause between successive stimuli.
• contrast (number, %): Contrast for one standard deviation of the stimulus.
• repeats (integer): Number of stimulus repetitions (0: infinite).
• binwidth (number, ms): Width of the bins used for estimating the firing rate.
• before (number, ms): Spikes recorded before stimulus.
• after (number, ms): Spikes recorded after stimulus.
• splitfiles (boolean ): Each stimulus in extra file.
• joinspikes (boolean ): Add spike trains to stimulus amplitude file.

Files

• stimspikes#.dat : the spikes elicited by each stimulus of trace #.
• stimnerveampl.dat : the nerve potential elicited b each stimulus.
• stimampl.dat : each stimulus trial.
• stimrate.dat : the firing rate for each stimulus.

Plots

• Firing Rate: Spikes (red) and firing rate (yellow).
• Stimulus: The stimuli (darkgreen, the most recent one green).

Requirements

• Transdermal EOD recording (EODTrace2) and events (EODEvents2).
• One or more spike events (SpikeEvents[*]) or nerve recordings (NerveTrace1).

Constructor & Destructor Documentation

FileStimulus

(

void

)

References TableKey::addNumber(), SampleData< T >::clear(), EventList::clear(), and TableKey::newSection().

Member Function Documentation

int main ( void  )

virtual

Implements RePro.

References FileStimulus::analyze(), OutData::back(), OutData::bandNoiseWave(), DaqError::busy(), OutData::clear(), EventList::clear(), MultiPlot::clear(), OutData::constWave(), MultiPlot::draw(), OutData::duration(), OutData::empty(), DaqError::error(), DaqError::errorText(), Str::expandPath(), OutData::fixSample(), OutData::indices(), OutData::intensity(), OutData::length(), OutData::load(), MultiPlot::lock(), maxAbs(), OutData::mute(), Str::name(), OutData::ouNoiseWave(), DaqError::OverflowUnderrun, FileStimulus::plot(), OutList::push(), EventList::reserve(), MultiPlot::resize(), OutData::resize(), FileStimulus::save(), FileStimulus::saveAmpl(), FileStimulus::saveNerve(), FileStimulus::saveNoise(), FileStimulus::saveSpikes(), MultiPlot::setCommonXRange(), MultiPlot::setCommonYRange(), OutData::setDelay(), OutData::setIdent(), OutData::setIntensity(), OutData::setPriority(), OutData::setStartSource(), OutData::setTrace(), OutData::size(), sqrt(), OutData::stepsize(), FileStimulus::stop(), DaqError::success(), and MultiPlot::unlock().

void stop

(

void

)

References EventList::clear(), SampleData< T >::clear(), MultiPlot::clearPlots(), MultiPlot::lock(), and MultiPlot::unlock().

Referenced by FileStimulus::main().

void saveRate

(

int

trace

)

References TableKey::addNumber(), TableKey::save(), TableKey::saveKey(), and SampleData< T >::size().

Referenced by FileStimulus::save().

void savePower

(

int

trace

)

References TableKey::addNumber(), TableKey::save(), TableKey::saveKey(), and SampleData< T >::size().

Referenced by FileStimulus::save().

void saveAmpl

(

void

)

References TableKey::save(), TableKey::saveKey(), and TableKey::setUnit().

Referenced by FileStimulus::main().

void saveNerve

(

void

)

References TableKey::save(), and TableKey::saveKey().

Referenced by FileStimulus::main().

void saveNervePower

(

void

)

References TableKey::addNumber(), SampleData< T >::pos(), TableKey::save(), TableKey::saveKey(), and SampleData< T >::size().

Referenced by FileStimulus::save().

void saveSpikes

(

int

trace

)

References EventList::back(), TableKey::save(), TableKey::saveKey(), EventData::size(), and EventList::size().

Referenced by FileStimulus::main().

void saveNoise	(	int	trace,
		int	trial,
		const OutData &	noisesignal,
		const OutData &	signal,
		double	noisefac,
		const OutData &	noise
	)

References OutData::empty(), OutData::pos(), TableKey::save(), TableKey::saveKey(), and OutData::size().

Referenced by FileStimulus::main().

void save

(

void

)

Save results data.

References FileStimulus::saveNervePower(), FileStimulus::savePower(), and FileStimulus::saveRate().

Referenced by FileStimulus::main().

void plot

(

void

)

Plot data.

References MultiPlot::clear(), Array< T >::decibel(), MultiPlot::draw(), MultiPlot::lock(), EventList::size(), and MultiPlot::unlock().

Referenced by FileStimulus::main().

void analyzeSpikes	(	const EventData &	se,
		int	k
	)

Analyze spikes.

References EventData::addFrequency(), EventData::addRate(), max(), EventList::push(), SampleData< T >::setRange(), SampleData< T >::size(), EventData::spectrum(), and SampleData< T >::stepsize().

Referenced by FileStimulus::analyze().

void analyze

(

void

)

Analyze data.

References FileStimulus::analyzeSpikes(), average(), EventList::back(), InData::begin(), EventData::begin(), InData::copy(), InData::end(), EventData::frequency(), EventList::front(), Detector< DataIter, TimeIter >::init(), InData::mean(), mean(), Detector< DataIter, TimeIter >::peakTrough(), rPSD(), SampleData< T >::setRange(), SampleData< T >::size(), EventList::size(), InData::stdev(), InData::stepsize(), EventIterator::time(), and InData::timeBegin().

Referenced by FileStimulus::main().

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The documentation for this class was generated from the following files:

• filestimulus.h
• filestimulus.cc