efish Relacs Plugins  0.9.8
Classes | Public Member Functions | List of all members
FICurve Class Reference

#include <ficurve.h>

Inheritance diagram for FICurve:
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Collaboration diagram for FICurve:
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Public Member Functions

 FICurve (void)
 
virtual int main (void)
 
virtual void sessionStarted (void)
 
void stop (void)
 
void saveRate (int trace)
 
void saveSpikes (int trace)
 
void saveFICurves (int trace)
 
void save (void)
 
void selectSlopes (void)
 
void selectRange (void)
 
void plot (void)
 
void analyzeSpikes (const EventData &se, int k, double truepreintensity, double trueintensity)
 
void analyze (void)
 
- Public Member Functions inherited from ConfigDialog
 ConfigDialog (const string &configident="", int configgroup=0, const string &name="", const string &author="", const string &version="", const string &date=__DATE__)
 
virtual ~ConfigDialog (void)
 
string name (void) const
 
virtual void setName (const string &name)
 
string author (void) const
 
virtual void setAuthor (const string &author)
 
string version (void) const
 
virtual void setVersion (const string &version)
 
string date (void) const
 
virtual void setDate (const string &date)
 
virtual OptWidget * dialogOptions (OptDialog *od, string *tabhotkeys=0)
 
virtual void dialogButtons (OptDialog *od)
 
virtual void dialogEmptyMessage (OptDialog *od)
 
int dialogSelectMask (void) const
 
void setDialogSelectMask (int mask)
 
void addDialogSelectMask (int mask)
 
int dialogReadOnlyMask (void) const
 
void setDialogReadOnlyMask (int mask)
 
void addDialogReadOnlyMask (int mask)
 
int dialogStyle (void) const
 
void setDialogStyle (int style)
 
void addDialogStyle (int style)
 
string dialogCaption (void) const
 
void setDialogCaption (const string &caption)
 
bool dialogHeader (void) const
 
void setDialogHeader (bool d)
 
string headerBackgroundColor (void) const
 
void setHeaderBackgroundColor (const string &color)
 
string headerForegroundColor (void) const
 
void setHeaderForegroundColor (const string &color)
 
string headerImageFile (void) const
 
void setHeaderImageFile (const string &file)
 
virtual void dialogHeaderWidget (OptDialog *od)
 
bool dialogHelp (void) const
 
void setDialogHelp (bool d)
 
string helpCaption (void) const
 
void setHelpCaption (const string &caption)
 
string helpPath (int inx=0) const
 
int helpPathes (void) const
 
void clearHelpPathes (void)
 
void setHelpPath (const string &path)
 
void addHelpPath (const string &path)
 
virtual string helpFileName (void) const
 
bool dialogOpen (void) const
 
bool helpOpen (void) const
 
QWidget * mainWidget (void)
 
virtual void setMainWidget (QWidget *widget)
 
void lock () const
 
void unlock () const
 
bool tryLock (int timeout=1)
 
QMutex * mutex (void)
 
- Public Member Functions inherited from ConfigClass
 ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0)
 
 ConfigClass (const ConfigClass &C)
 
virtual ~ConfigClass (void)
 
const string & configIdent (void) const
 
void setConfigIdent (const string &ident)
 
int configGroup (void) const
 
void setConfigGroup (int group)
 
int configMode (void) const
 
void setConfigMode (int mode)
 
void addConfigMode (int mode)
 
void delConfigMode (int mode)
 
int configSelectMask (void) const
 
void setConfigSelectMask (int mask)
 
void addConfig (void)
 
void readConfig (void)
 
virtual void readConfig (StrQueue &sq)
 
virtual void saveConfig (ofstream &str)
 
virtual int configSize (void) const
 
virtual void config (void)
 
virtual void preConfig (void)
 

Additional Inherited Members

- Public Types inherited from ConfigClass
enum  Action
 
- Public Slots inherited from ConfigDialog
virtual void dialog (void)
 
virtual void help (void)
 
virtual void notifyDialog (const Options &opt)
 
- Signals inherited from ConfigDialog
void dialogAccepted (void)
 
void dialogAction (int r)
 
void dialogClosed (int r)
 
- Static Public Member Functions inherited from ConfigClass
static void setConfigureClasses (ConfigureClasses *cfg)
 
- Protected Slots inherited from ConfigDialog
void notificationFromDialog (const Parameter &p)
 
virtual void dClosed (int r)
 
virtual void hClosed (int r)
 
- Protected Member Functions inherited from ConfigDialog
void setDialogOpen (bool open=true)
 
void setHelpOpen (bool open=true)
 
- Protected Attributes inherited from ConfigDialog
Options DialogOptions
 

Detailed Description

[RePro] Measures f-I curves of electrosensory neurons.

Author
Jan Benda
Version
1.6 (Nov 19, 2010)
Options
  • duration (number, ms): Duration of stimulus.
  • preduration (number, ms): Duration of preadapting stimulus.
  • pause (number, ms): Pause between successive stimuli.
  • delay (number, ms): Part of pause before stimulus.
  • maxintfac (number): Maximum intensity factor.
  • minintfac (number): Minimum intensity factor.
  • nints (integer): Number of stimulus intensities.
  • maxpreintfac (number): Maximum intensity of preadapting stimulus.
  • minpreintfac (number): Minimum intensity of preadapting stimulus.
  • npreints (integer): Number of preadapting intensities.
  • repeats (integer): Number of repetitions.
  • blockrepeats (integer): Number of repetitions of an intensity sequence.
  • singlerepeats (integer): Number of immediate repetitions of each intensity.
  • medres (integer): Medium resolution.
  • nskip (integer): NSkip.
  • minrateslope (number, Hz/mV/cm): Minimum slope of f-I curve.
Files
  • fispikes#.dat : the spikes of trace #.
  • firate.dat : the firing rate.
  • ficurve#.dat : Summary of f-I curve data of trace #.
Plots
  • f-I curve : baseline activity (blue), prestimulus rate (orange), onset rate (green), steady state (red)
  • firing rate : spikes (red), firing frequency (yellow), stimuli onsets (white)
Requirements
  • Transdermal EOD recording (EODTrace2) and events (EODEvents2).
  • One or more spike events (SpikeEvents[*]).

Constructor & Destructor Documentation

FICurve ( void  )

References RangeLoop::clear().

Member Function Documentation

int main ( void  )
virtual

Implements RePro.

References FICurve::analyze(), OutData::append(), DaqError::busy(), OutData::clear(), MultiPlot::clear(), OutData::constWave(), RangeLoop::count(), DaqError::error(), DaqError::errorText(), RangeLoop::finishedBlock(), OutData::fixedSampleRate(), MultiPlot::lock(), RangeLoop::maxCount(), RangeLoop::maxValue(), OutData::minSampleInterval(), RangeLoop::minValue(), DaqError::OverflowUnderrun, FICurve::plot(), RangeLoop::pos(), OutData::pulseWave(), RangeLoop::reset(), OutData::resize(), MultiPlot::resize(), FICurve::save(), FICurve::selectRange(), RangeLoop::set(), RangeLoop::setBlockRepeat(), OutData::setCarrierFreq(), MultiPlot::setCommonXRange(), MultiPlot::setCommonYRange(), OutData::setDelay(), OutData::setIdent(), RangeLoop::setIncrement(), OutData::setIntensity(), OutData::setPriority(), RangeLoop::setRepeat(), RangeLoop::setSequence(), RangeLoop::setSingleRepeat(), OutData::setStartSource(), OutData::setTrace(), RangeLoop::size(), RangeLoop::step(), OutData::stepsize(), FICurve::stop(), DaqError::success(), and MultiPlot::unlock().

void sessionStarted ( void  )
virtual
void stop ( void  )

References RangeLoop::clear().

Referenced by FICurve::main().

void saveRate ( int  trace)

References TableKey::addNumber(), RangeLoop::pos(), TableKey::save(), TableKey::saveKey(), RangeLoop::size(), and RangeLoop::value().

Referenced by FICurve::save().

void saveSpikes ( int  trace)

References TableKey::addNumber(), RangeLoop::pos(), TableKey::saveKey(), RangeLoop::size(), and RangeLoop::value().

Referenced by FICurve::save().

void saveFICurves ( int  trace)

References TableKey::addNumber(), RangeLoop::pos(), TableKey::save(), TableKey::saveKey(), RangeLoop::size(), and RangeLoop::value().

Referenced by FICurve::save().

void save ( void  )

References RangeLoop::loop(), FICurve::saveFICurves(), FICurve::saveRate(), FICurve::saveSpikes(), and RangeLoop::value().

Referenced by FICurve::main().

void selectSlopes ( void  )
void selectRange ( void  )

References RangeLoop::currentIncrement(), max(), min(), RangeLoop::next(), RangeLoop::pos(), RangeLoop::previous(), RangeLoop::setSkipAbove(), RangeLoop::setSkipBelow(), and RangeLoop::size().

Referenced by FICurve::main().

void plot ( void  )

References RangeLoop::active(), MultiPlot::clear(), Map< T >::clear(), RangeLoop::count(), MultiPlot::draw(), MultiPlot::lock(), RangeLoop::pos(), Map< T >::push(), Map< T >::reserve(), RangeLoop::size(), MultiPlot::unlock(), and RangeLoop::value().

Referenced by FICurve::main().

void analyzeSpikes ( const EventData &  se,
int  k,
double  truepreintensity,
double  trueintensity 
)

References EventData::addFrequency(), max(), and RangeLoop::pos().

Referenced by FICurve::analyze().

void analyze ( void  )

References FICurve::analyzeSpikes().

Referenced by FICurve::main().

The documentation for this class was generated from the following files:
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