Chirps Class Reference

#include <chirps.h>

Inheritance diagram for Chirps:

Collaboration diagram for Chirps:

Public Member Functions
	Chirps (void)
virtual int	main (void)
virtual void	sessionStarted (void)
virtual void	sessionStopped (bool saved)
void	stop (void)
void	saveChirps (void)
void	saveChirpTraces (void)
void	saveChirpSpikes (int trace)
void	saveChirpNerve (void)
void	saveAmplitude (void)
void	saveSpikes (int trace)
void	saveChirpRate (int trace)
void	saveNerve (void)
void	save (void)
void	plot (void)
void	analyze (void)
Public Member Functions inherited from ConfigDialog
	ConfigDialog (const string &configident="", int configgroup=0, const string &name="", const string &author="", const string &version="", const string &date=__DATE__)
virtual	~ConfigDialog (void)
string	name (void) const
virtual void	setName (const string &name)
string	author (void) const
virtual void	setAuthor (const string &author)
string	version (void) const
virtual void	setVersion (const string &version)
string	date (void) const
virtual void	setDate (const string &date)
virtual OptWidget *	dialogOptions (OptDialog *od, string *tabhotkeys=0)
virtual void	dialogButtons (OptDialog *od)
virtual void	dialogEmptyMessage (OptDialog *od)
int	dialogSelectMask (void) const
void	setDialogSelectMask (int mask)
void	addDialogSelectMask (int mask)
int	dialogReadOnlyMask (void) const
void	setDialogReadOnlyMask (int mask)
void	addDialogReadOnlyMask (int mask)
int	dialogStyle (void) const
void	setDialogStyle (int style)
void	addDialogStyle (int style)
string	dialogCaption (void) const
void	setDialogCaption (const string &caption)
bool	dialogHeader (void) const
void	setDialogHeader (bool d)
string	headerBackgroundColor (void) const
void	setHeaderBackgroundColor (const string &color)
string	headerForegroundColor (void) const
void	setHeaderForegroundColor (const string &color)
string	headerImageFile (void) const
void	setHeaderImageFile (const string &file)
virtual void	dialogHeaderWidget (OptDialog *od)
bool	dialogHelp (void) const
void	setDialogHelp (bool d)
string	helpCaption (void) const
void	setHelpCaption (const string &caption)
string	helpPath (int inx=0) const
int	helpPathes (void) const
void	clearHelpPathes (void)
void	setHelpPath (const string &path)
void	addHelpPath (const string &path)
virtual string	helpFileName (void) const
bool	dialogOpen (void) const
bool	helpOpen (void) const
QWidget *	mainWidget (void)
virtual void	setMainWidget (QWidget *widget)
void	lock () const
void	unlock () const
bool	tryLock (int timeout=1)
QMutex *	mutex (void)
Public Member Functions inherited from ConfigClass
	ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0)
	ConfigClass (const ConfigClass &C)
virtual	~ConfigClass (void)
const string &	configIdent (void) const
void	setConfigIdent (const string &ident)
int	configGroup (void) const
void	setConfigGroup (int group)
int	configMode (void) const
void	setConfigMode (int mode)
void	addConfigMode (int mode)
void	delConfigMode (int mode)
int	configSelectMask (void) const
void	setConfigSelectMask (int mask)
void	addConfig (void)
void	readConfig (void)
virtual void	readConfig (StrQueue &sq)
virtual void	saveConfig (ofstream &str)
virtual int	configSize (void) const
virtual void	config (void)
virtual void	preConfig (void)

Additional Inherited Members
Public Types inherited from ConfigClass
enum	Action
Public Slots inherited from ConfigDialog
virtual void	dialog (void)
virtual void	help (void)
virtual void	notifyDialog (const Options &opt)
Signals inherited from ConfigDialog
void	dialogAccepted (void)
void	dialogAction (int r)
void	dialogClosed (int r)
Static Public Member Functions inherited from ConfigClass
static void	setConfigureClasses (ConfigureClasses *cfg)
Protected Slots inherited from ConfigDialog
void	notificationFromDialog (const Parameter &p)
virtual void	dClosed (int r)
virtual void	hClosed (int r)
Protected Member Functions inherited from ConfigDialog
void	setDialogOpen (bool open=true)
void	setHelpOpen (bool open=true)
Protected Attributes inherited from ConfigDialog
Options	DialogOptions

Detailed Description

[RePro] Measures responses to chirps.

Author

Jan Benda

Version

2.0 (Nov 11, 2014)

Todo:

Make independent of beat detector

Screenshot

Options

• nchirps (integer): Number of chirps per stimulus.
• minspace (number, ms): Minimum time between chirps (AM only).
• firstspace (number, ms): Time preceeding first chirp (AM only).
• pause (number, ms): Pause between successive stimuli.
• deltaf (number, Hz): Beat frequency.
• contrast (number, %): Contrast (AM amplitude / EOD amplitude)
• chirpsize (number, Hz): Size of the chirp.
• chirpwidth (number, ms): Width of the chirp.
• chirpkurtosis (number): Kurtosis of Gaussian chirp (>1 broader, <1 narrower).
• chirpampl (number, %): Reduction of EOD amplitude during a chirp.
• repeats (integer): Number of stimulus repetitions (0: infinite).
• beatpos (integer): Number of beat positions used for analysis.
• ratedt (number, ms): Resolution of firing rate.
• am (boolean): AM stimulus or direct stimulus.
• sinewave (boolean): If direct stimulus: use sine wave or the fishes EOD.
• playback (boolean): Record transdermal amplitude evoked by direct stimulus and replay it as an AM stimulus.

Files

• chirps.dat : General information for each chirp in each stimulus.
• chirptraces.dat : Frequency and amplitude of the transdermal EOD for each chirp.
• chirpspikes#.dat : The spikes elicited by each chirp of trace #.
• chirpallspikes#.dat : The spikes elicited by each stimulus of trace #.
• chirpnerveampl.dat : The nerve potential elicited by each chirp.
• chirpnervesmoothampl.dat : The smoothed nerve potential elicited by each chirp.
• chirpallnerveampl.dat : The nerve potential elicited by each stimulus.
• chirpallnervesmoothampl.dat : The smoothed nerve potential elicited by each stimulus.
• chirpeodampl.dat : Amplitude of the transdermal EOD for each stimulus.
• chirprate.dat : The firing rate for each chirp position.

Plots

• Rate: Spikes (direct stimulus: red, AM: magenta) and firing rate (direct stimulus: yellow, AM: orange) for each chirp position.
• Beat: Amplitude of transdermal EOD for each chirp position (darkgreen). Last stimulus green.

Requirements

• Optional: EOD events (EODEvents1). Recommended if direct stimulation is used.
• Transdermal EOD recording (EODTrace2) and events (EODEvents2).
• Recording of the stimulus events (SignalEvents1) if direct stimuli are used.
• One or more spike events (SpikeEvents[*]) or nerve recordings (NerveTrace1).

Constructor & Destructor Documentation

Chirps

(

void

)

References TableKey::addNumber(), Map< T >::clear(), EventData::clear(), SampleData< T >::clear(), Array< T >::clear(), and TableKey::newSection().

Member Function Documentation

int main ( void  )

virtual

Implements RePro.

References Chirps::analyze(), Map< T >::assign(), DaqError::busy(), SampleData< T >::clear(), EventData::clear(), Map< T >::clear(), DataFile::col(), TableData::columns(), DataFile::data(), DataFile::dataLines(), Array< T >::empty(), DaqError::error(), DaqError::errorStr(), DaqError::errorText(), DataFile::key(), maxAbs(), maxIndex(), DataFile::metaDataOptions(), DaqError::OverflowUnderrun, Chirps::plot(), DataFile::read(), Chirps::save(), Chirps::saveAmplitude(), Chirps::saveChirpNerve(), Chirps::saveChirps(), Chirps::saveChirpSpikes(), Chirps::saveChirpTraces(), Chirps::saveNerve(), Chirps::saveSpikes(), OutData::setIntensity(), OutData::setPriority(), OutData::setStartSource(), TableKey::setUnit(), Chirps::stop(), DaqError::success(), and TableKey::unit().

void sessionStarted ( void  )

virtual

void sessionStopped ( bool  saved )

virtual

void stop

(

void

)

References Array< T >::clear(), EventData::clear(), Map< T >::free(), and SampleData< T >::free().

Referenced by Chirps::main().

void saveChirps

(

void

)

References TableKey::save(), and TableKey::saveKey().

Referenced by Chirps::main().

void saveChirpTraces

(

void

)

References TableKey::save(), and TableKey::saveKey().

Referenced by Chirps::main().

void saveChirpSpikes

(

int

trace

)

References TableKey::save(), and TableKey::saveKey().

Referenced by Chirps::main().

void saveChirpNerve

(

void

)

References Map< T >::empty(), SampleData< T >::empty(), SampleData< T >::pos(), TableKey::save(), TableKey::saveKey(), Map< T >::x(), and Map< T >::y().

Referenced by Chirps::main().

void saveAmplitude

(

void

)

References TableKey::save(), TableKey::saveKey(), Map< T >::size(), Map< T >::x(), and Map< T >::y().

Referenced by Chirps::main().

void saveSpikes

(

int

trace

)

References TableKey::save(), TableKey::saveKey(), and EventData::size().

Referenced by Chirps::main().

void saveChirpRate

(

int

trace

)

References TableKey::addNumber(), TableKey::save(), and TableKey::saveKey().

Referenced by Chirps::save().

void saveNerve

(

void

)

References Map< T >::empty(), SampleData< T >::empty(), SampleData< T >::pos(), TableKey::save(), TableKey::saveKey(), SampleData< T >::size(), Map< T >::size(), Map< T >::x(), and Map< T >::y().

Referenced by Chirps::main().

void save

(

void

)

References Chirps::saveChirpRate().

Referenced by Chirps::main().

void plot

(

void

)

References MultiPlot::clear(), MultiPlot::draw(), MultiPlot::lock(), and MultiPlot::unlock().

Referenced by Chirps::main().

void analyze

(

void

)

References average(), EventList::back(), InData::begin(), EventData::begin(), Map< T >::clear(), SampleData< T >::clear(), EventData::copy(), InData::end(), EventData::eventSize(), floor(), EventData::frequency(), EventList::front(), Detector< DataIter, TimeIter >::init(), InData::mean(), EventData::next(), Detector< DataIter, TimeIter >::peakTrough(), SampleData< T >::pos(), EventData::previous(), Map< T >::push(), Array< T >::push(), Map< T >::reserve(), GaussKernel::setStdev(), SampleData< T >::size(), EventData::size(), EventList::size(), Map< T >::size(), Array< T >::size(), InData::stdev(), EventIterator::time(), InData::timeBegin(), and Map< T >::x().

Referenced by Chirps::main().

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The documentation for this class was generated from the following files:

• chirps.h
• chirps.cc