ManualJAR Class Reference

#include <manualjar.h>

Inheritance diagram for ManualJAR:

Collaboration diagram for ManualJAR:

Public Slots
void	setValues (void)
Public Slots inherited from ConfigDialog
virtual void	dialog (void)
virtual void	help (void)
virtual void	notifyDialog (const Options &opt)

Public Member Functions
	ManualJAR (void)
virtual int	main (void)
virtual void	sessionStarted (void)
void	initPlot (double deltaf, bool lineardeltaf, double deltaf2, double amplitude, double duration, double before, double after, double eodf, const MapD &eodfrequency, const EventData &jarchirpevents)
void	save (double deltaf, bool lineardeltaf, double deltaf2, double amplitude, double duration, double pause, double fishrate, double stimulusrate, const MapD &eodfrequency, const MapD &eodamplitude, const EventData &jarchirpevents, bool split, int count)
void	saveEODFreq (const Options &header, const MapD &eodfrequency, const MapD &eodamplitude, bool split, int count)
void	saveChirps (const Options &header, const EventData &jarchirpevents, bool split, int count)
Public Member Functions inherited from ConfigDialog
	ConfigDialog (const string &configident="", int configgroup=0, const string &name="", const string &author="", const string &version="", const string &date=__DATE__)
virtual	~ConfigDialog (void)
string	name (void) const
virtual void	setName (const string &name)
string	author (void) const
virtual void	setAuthor (const string &author)
string	version (void) const
virtual void	setVersion (const string &version)
string	date (void) const
virtual void	setDate (const string &date)
virtual OptWidget *	dialogOptions (OptDialog *od, string *tabhotkeys=0)
virtual void	dialogButtons (OptDialog *od)
virtual void	dialogEmptyMessage (OptDialog *od)
int	dialogSelectMask (void) const
void	setDialogSelectMask (int mask)
void	addDialogSelectMask (int mask)
int	dialogReadOnlyMask (void) const
void	setDialogReadOnlyMask (int mask)
void	addDialogReadOnlyMask (int mask)
int	dialogStyle (void) const
void	setDialogStyle (int style)
void	addDialogStyle (int style)
string	dialogCaption (void) const
void	setDialogCaption (const string &caption)
bool	dialogHeader (void) const
void	setDialogHeader (bool d)
string	headerBackgroundColor (void) const
void	setHeaderBackgroundColor (const string &color)
string	headerForegroundColor (void) const
void	setHeaderForegroundColor (const string &color)
string	headerImageFile (void) const
void	setHeaderImageFile (const string &file)
virtual void	dialogHeaderWidget (OptDialog *od)
bool	dialogHelp (void) const
void	setDialogHelp (bool d)
string	helpCaption (void) const
void	setHelpCaption (const string &caption)
string	helpPath (int inx=0) const
int	helpPathes (void) const
void	clearHelpPathes (void)
void	setHelpPath (const string &path)
void	addHelpPath (const string &path)
virtual string	helpFileName (void) const
bool	dialogOpen (void) const
bool	helpOpen (void) const
QWidget *	mainWidget (void)
virtual void	setMainWidget (QWidget *widget)
void	lock () const
void	unlock () const
bool	tryLock (int timeout=1)
QMutex *	mutex (void)
Public Member Functions inherited from ConfigClass
	ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0)
	ConfigClass (const ConfigClass &C)
virtual	~ConfigClass (void)
const string &	configIdent (void) const
void	setConfigIdent (const string &ident)
int	configGroup (void) const
void	setConfigGroup (int group)
int	configMode (void) const
void	setConfigMode (int mode)
void	addConfigMode (int mode)
void	delConfigMode (int mode)
int	configSelectMask (void) const
void	setConfigSelectMask (int mask)
void	addConfig (void)
void	readConfig (void)
virtual void	readConfig (StrQueue &sq)
virtual void	saveConfig (ofstream &str)
virtual int	configSize (void) const
virtual void	config (void)
virtual void	preConfig (void)
Public Member Functions inherited from Traces
	Traces (void)
Public Member Functions inherited from StandardTraces
	StandardTraces (void)
Public Member Functions inherited from EODTools
	EODTools (void)
double	eodThreshold (const InData &data, double tbegin, double tend, double contrast=0.2)
void	eodPeaks (const InData &data, double tbegin, double tend, double threshold, EventData &peaks)
void	eodTroughs (const InData &data, double tbegin, double tend, double threshold, EventData &troughs)
void	eodPeaksTroughs (const InData &data, double tbegin, double tend, double threshold, EventData &peaks, EventData &troughs)
double	meanPeaks (const InData &data, double tbegin, double tend, double threshold)
double	meanTroughs (const InData &data, double tbegin, double tend, double threshold)
double	eodAmplitude (const InData &data, double tbegin, double tend)
void	beatAmplitudes (const InData &eodd, double tbegin, double tend, double period, double contrast, double &uppermean, double &upperampl, double &lowermean, double &lowerampl)
double	beatAmplitude (const InData &eodd, double tbegin, double tend, double period, double contrast=0.2)
double	beatContrast (const InData &eodd, double tbegin, double tend, double period, double contrast=0.2)

Protected Member Functions
virtual void	keyPressEvent (QKeyEvent *e)
virtual void	customEvent (QEvent *qce)
Protected Member Functions inherited from ConfigDialog
void	setDialogOpen (bool open=true)
void	setHelpOpen (bool open=true)

Protected Attributes
Plot	P
OptWidget	JW
QLabel *	ModeLabel
QLabel *	ElapsedTimeLabel
QPushButton *	StartButton
bool	Start
int	Count
Protected Attributes inherited from ConfigDialog
Options	DialogOptions

Additional Inherited Members
Public Types inherited from ConfigClass
enum	Action
Signals inherited from ConfigDialog
void	dialogAccepted (void)
void	dialogAction (int r)
void	dialogClosed (int r)
Static Public Member Functions inherited from ConfigClass
static void	setConfigureClasses (ConfigureClasses *cfg)
Static Public Member Functions inherited from Traces
static void	initialize (const RELACSPlugin *rp, const InList &data, const EventList &events)
Protected Slots inherited from ConfigDialog
void	notificationFromDialog (const Parameter &p)
virtual void	dClosed (int r)
virtual void	hClosed (int r)
Static Protected Member Functions inherited from StandardTraces
static void	clearIndices (int *traceindices, int n=-1)
static void	initStandardTraces (const InList &data, int *ntraces, int *traceindices, const string *names, string &namelist, bool alpha=false)
static void	initStandardEventTraces (const InList &data, const EventList &events, int *ntraces, int *traceindices, int *eventindices, const string *tracenames, const string *eventnames, string &tracenamelist, string &eventnamelist, bool alpha=false)
static void	initStandardOutputs (const RELACSPlugin *rp, int *ntraces, int *traceindices, const string *names, string &namelist, bool alpha=false)
Static Protected Attributes inherited from Traces
static int	EODTrace = -1
static int	EODEvents = -1
static int	ChirpEvents = -1
static int	LocalEODTraces = 0
static int	LocalEODTrace [MaxTraces] = { -1, -1, -1, -1 }
static int	LocalEODEvents [MaxTraces] = { -1, -1, -1, -1 }
static int	LocalChirpEvents [MaxTraces] = { -1, -1, -1, -1 }
static int	LocalBeatPeakEvents [MaxTraces] = { -1, -1, -1, -1 }
static int	LocalBeatTroughEvents [MaxTraces] = { -1, -1, -1, -1 }
static int	FishEODTanks = 0
static int	FishEODTraces [MaxTraces] = { 0, 0, 0, 0 }
static int	FishEODTrace [MaxTraces][MaxTraces] = { { -1, -1, -1, -1 }, { -1, -1, -1, -1 } }
static int	FishEODEvents [MaxTraces][MaxTraces] = { { -1, -1, -1, -1 }, { -1, -1, -1, -1 } }
static int	FishChirpEvents [MaxTraces][MaxTraces] = { { -1, -1, -1, -1 }, { -1, -1, -1, -1 } }
static int	GlobalEField = -1
static int	GlobalAMEField = -1
static int	LocalEFields = 0
static int	LocalEField [MaxTraces] = { -1, -1, -1, -1 }
static int	LocalAMEFields = 0
static int	LocalAMEField [MaxTraces] = { -1, -1, -1, -1 }
static int	FishEFields = 0
static int	FishEField [MaxTraces] = { -1, -1, -1, -1 }
static int	EFields = 0
static int	EField [2 *MaxTraces] = { -1, -1, -1, -1 }
static int	GlobalEFieldTrace = -1
static int	GlobalEFieldEvents = -1
static int	LocalEFieldTraces = 0
static int	LocalEFieldTrace [MaxTraces] = { -1, -1, -1, -1 }
static int	LocalEFieldEvents [MaxTraces] = { -1, -1, -1, -1 }
static int	FishEFieldTraces = 0
static int	FishEFieldTrace [MaxTraces] = { -1, -1, -1, -1 }
static int	FishEFieldEvents [MaxTraces] = { -1, -1, -1, -1 }
Static Protected Attributes inherited from StandardTraces
static const int	MaxTraces

Detailed Description

[RePro] Apply sinewaves with manually set difference frequencies and amplitudes.

Author

Jan Benda

Version

1.2 (Nov 4, 2016)

Options

• eodf=0Hz: Current EOD frequency (number)
• deltaf=0Hz: Difference frequency (number)
• lineardeltaf=false: Change difference frequency linearly (boolean)
• deltaf2=0Hz: Difference frequency at end (number)
• amplitude=1mV: Amplitude (number)
• duration=10seconds: Signal duration (number)
• ramp=0.5seconds: Duration of linear ramp (number)
• fakefish=0Hz: Assume a fish with frequency (number)
• showlineardeltaf=false: Show dialog for linearly changing deltaf (boolean)
• before=1seconds: Time before stimulation to be analyzed (number)
• after=1seconds: Time after stimulation to be analyzed (number)
• averagetime=1seconds: Time for computing EOD frequency (number)
• split=false: Save each run into a separate file (boolean)
• savetraces=false: Save traces during pause (boolean)

Constructor & Destructor Documentation

ManualJAR

(

void

)

References OptWidget::assign(), ManualJAR::Count, ManualJAR::ElapsedTimeLabel, ManualJAR::JW, Plot::lock(), ManualJAR::ModeLabel, ConfigDialog::mutex(), ManualJAR::P, Plot::setBMarg(), ConfigClass::setConfigSelectMask(), ConfigDialog::setDialogSelectMask(), Plot::setLMarg(), OptWidget::setMargins(), Plot::setRMarg(), Plot::setTMarg(), ManualJAR::setValues(), OptWidget::setVerticalSpacing(), Plot::setXLabel(), Plot::setYLabel(), Plot::setYRange(), ManualJAR::StartButton, and Plot::unlock().

Member Function Documentation

int main ( void  )

virtual

Implements RePro.

References EventData::assign(), EventData::begin(), ceil(), Traces::ChirpEvents, Plot::clear(), Map< T >::clear(), EventData::clear(), ManualJAR::Count, Plot::draw(), EventData::end(), Traces::EODEvents, Traces::EODTrace, DaqError::errorText(), DaqError::failed(), Traces::GlobalEField, ManualJAR::initPlot(), ManualJAR::JW, OutData::length(), Plot::lock(), ManualJAR::P, Plot::plotVLine(), Map< T >::push(), Map< T >::reserve(), EventData::reserve(), ManualJAR::save(), OutData::setDelay(), OutData::setIntensity(), OutData::setTrace(), Plot::setXRange(), OutData::sineWave(), ManualJAR::Start, OutData::sweepWave(), EventIterator::time(), Plot::unlock(), and OptWidget::updateValue().

void sessionStarted ( void  )

virtual

References ManualJAR::Count.

void initPlot	(	double	deltaf,
		bool	lineardeltaf,
		double	deltaf2,
		double	amplitude,
		double	duration,
		double	before,
		double	after,
		double	eodf,
		const MapD &	eodfrequency,
		const EventData &	jarchirpevents
	)

References Plot::clear(), Plot::draw(), Plot::keepPointer(), Plot::lock(), ConfigDialog::mutex(), ManualJAR::P, Plot::plot(), Plot::plotVLine(), Plot::setDataMutex(), Plot::setTitle(), Plot::setXRange(), Plot::setYFallBackRange(), Plot::setYRange(), and Plot::unlock().

Referenced by ManualJAR::main().

void save	(	double	deltaf,
		bool	lineardeltaf,
		double	deltaf2,
		double	amplitude,
		double	duration,
		double	pause,
		double	fishrate,
		double	stimulusrate,
		const MapD &	eodfrequency,
		const MapD &	eodamplitude,
		const EventData &	jarchirpevents,
		bool	split,
		int	count
	)

References ManualJAR::saveChirps(), and ManualJAR::saveEODFreq().

Referenced by ManualJAR::main().

void saveEODFreq	(	const Options &	header,
		const MapD &	eodfrequency,
		const MapD &	eodamplitude,
		bool	split,
		int	count
	)

References TableKey::addNumber(), Traces::EODEvents, TableKey::save(), TableKey::saveKey(), Map< T >::size(), EventData::sizeFormat(), EventData::sizeScale(), EventData::sizeUnit(), Map< T >::x(), and Map< T >::y().

Referenced by ManualJAR::save().

void saveChirps	(	const Options &	header,
		const EventData &	jarchirpevents,
		bool	split,
		int	count
	)

References TableKey::addNumber(), Traces::ChirpEvents, EventData::eventSize(), EventData::eventWidth(), TableKey::save(), TableKey::saveKey(), EventData::size(), EventData::sizeFormat(), EventData::sizeScale(), EventData::sizeUnit(), EventData::widthFormat(), EventData::widthScale(), and EventData::widthUnit().

Referenced by ManualJAR::save().

void setValues ( void  )

slot

References OptWidget::accept(), ManualJAR::JW, and ManualJAR::Start.

Referenced by ManualJAR::ManualJAR().

void keyPressEvent ( QKeyEvent *  e )

protectedvirtual

References ManualJAR::StartButton.

void customEvent ( QEvent *  qce )

protectedvirtual

References OptWidget::assign(), ManualJAR::ElapsedTimeLabel, OptWidget::firstWidget(), ManualJAR::JW, ManualJAR::ModeLabel, ConfigDialog::mutex(), and ManualJAR::StartButton.

Member Data Documentation

Plot P

protected

Referenced by ManualJAR::initPlot(), ManualJAR::main(), and ManualJAR::ManualJAR().

OptWidget JW

protected

Referenced by ManualJAR::customEvent(), ManualJAR::main(), ManualJAR::ManualJAR(), and ManualJAR::setValues().

QLabel* ModeLabel

protected

Referenced by ManualJAR::customEvent(), and ManualJAR::ManualJAR().

QLabel* ElapsedTimeLabel

protected

Referenced by ManualJAR::customEvent(), and ManualJAR::ManualJAR().

QPushButton* StartButton

protected

Referenced by ManualJAR::customEvent(), ManualJAR::keyPressEvent(), and ManualJAR::ManualJAR().

bool Start

protected

Referenced by ManualJAR::main(), and ManualJAR::setValues().

int Count

protected

Referenced by ManualJAR::main(), ManualJAR::ManualJAR(), and ManualJAR::sessionStarted().

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The documentation for this class was generated from the following files:

• manualjar.h
• manualjar.cc