#include <spikingneuron.h>

Inheritance diagram for TraubMiles:

Collaboration diagram for TraubMiles:

Public Member Functions
	TraubMiles (void)

virtual string	name (void) const

virtual int	dimension (void) const

virtual void	variables (vector< string > &varnames) const

virtual void	units (vector< string > &u) const

virtual void	operator() (double t, double s, double x, double dxdt, int n)

virtual void	init (double *x) const

virtual void	conductances (vector< string > &conductancenames) const

virtual void	conductances (double *g) const

virtual void	currents (vector< string > &currentnames) const

virtual void	currents (double *c) const

virtual void	add (void)

virtual void	notify (void)

Public Member Functions inherited from HodgkinHuxley
	HodgkinHuxley (void)

Public Member Functions inherited from SpikingNeuron
	SpikingNeuron (void)

virtual	~SpikingNeuron (void)

virtual string	conductanceUnit (void) const

virtual string	currentUnit (void) const

virtual string	inputUnit (void) const

double	gain (void) const

double	offset (void) const

Public Member Functions inherited from ConfigClass
	ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0)

	ConfigClass (const ConfigClass &C)

virtual	~ConfigClass (void)

const string &	configIdent (void) const

void	setConfigIdent (const string &ident)

int	configGroup (void) const

void	setConfigGroup (int group)

int	configMode (void) const

void	setConfigMode (int mode)

void	addConfigMode (int mode)

void	delConfigMode (int mode)

int	configSelectMask (void) const

void	setConfigSelectMask (int mask)

void	addConfig (void)

void	readConfig (void)

virtual void	readConfig (StrQueue &sq)

virtual void	saveConfig (ofstream &str)

virtual int	configSize (void) const

virtual void	config (void)

virtual void	preConfig (void)

Protected Attributes
double	GCa

double	GAHP

double	GCaGates

double	GAHPGates

double	ECa

double	EAHP

double	ICa

double	IAHP

Protected Attributes inherited from HodgkinHuxley
double	C

double	PT

double	ENa

double	EK

double	EL

double	GNa

double	GK

double	GL

double	GNaGates

double	GKGates

double	INa

double	IK

double	IL

Protected Attributes inherited from SpikingNeuron
double	Gain

double	Offset

Additional Inherited Members
Public Types inherited from ConfigClass
enum	Action

Static Public Member Functions inherited from ConfigClass
static void	setConfigureClasses (ConfigureClasses *cfg)

Static Public Attributes inherited from SpikingNeuron
static const int	ScalingFlag = 16

static const int	ModelFlag = 32

static const int	DescriptionFlag = 64

Detailed Description

[ModelLib] The soma compartment of the Traub-Miles (1991) model

Author: Jan Benda

Todo:

unit of calcium concentration

verify reference, parameter values, and units

This is an implementation of the soma compartment only of the Traub-Miles model (Roger D. Traub and Robert K. S. Wong and Richard Miles and Hillary Michelson (1991): A model of a CA3 hippocampal pyramidal neuron incorporating voltage-clamp data on intrinsic conductances. J. Neurophysiol. 66, pp. 635-650).

Conductances are from Traub, scaled to Ermentrouts Na. Potentials are from Traub & Miles (1991)

Constructor & Destructor Documentation

Member Function Documentation

string name ( void ) const

virtual

Returns: the name of the model.

Reimplemented from HodgkinHuxley.

int dimension ( void ) const

virtual

Returns: the dimension of the system.

See Also: variables(), operator()()

Reimplemented from HodgkinHuxley.

Referenced by TraubMiles::units(), and TraubMiles::variables().

void variables ( vector< string > & varnames ) const

virtual

Parameters

[out] varnames the names of each of the dimension() variables. Gating variables (ranging between 0 and 1) should be a single lower-case character, potentials and equivalent potentials a single upper-case character, and concentrations should be in brackets (e.g. [Ca]).

See Also: dimension(), units(), operator()()

Reimplemented from HodgkinHuxley.

References TraubMiles::dimension().

void units ( vector< string > & u ) const

virtual

Parameters

[out] u the units of the variables returned by variables().

See Also: dimension(), operator()()

Reimplemented from HodgkinHuxley.

References TraubMiles::dimension().

void operator()	(	double	t,
		double	s,
		double *	x,
		double *	dxdt,
		int	n
	)

virtual

Computes the derivative dxdt at time t with stimulus s given the state x.

Reimplemented from HodgkinHuxley.

References HodgkinHuxley::C, TraubMiles::EAHP, TraubMiles::ECa, HodgkinHuxley::EK, HodgkinHuxley::EL, HodgkinHuxley::ENa, relacs::exp(), TraubMiles::GAHP, TraubMiles::GAHPGates, TraubMiles::GCa, TraubMiles::GCaGates, HodgkinHuxley::GK, HodgkinHuxley::GKGates, HodgkinHuxley::GL, HodgkinHuxley::GNa, HodgkinHuxley::GNaGates, TraubMiles::IAHP, TraubMiles::ICa, HodgkinHuxley::IK, HodgkinHuxley::IL, and HodgkinHuxley::INa.

void init ( double * x ) const

virtual

Initialize the state x with usefull inital conditions.

Reimplemented from HodgkinHuxley.

void conductances ( vector< string > & conductancenames ) const

virtual

Returns in conductancenames the names of the individual ionic conductances that conductances(double*) const would return.

Reimplemented from HodgkinHuxley.

void conductances ( double * g ) const

virtual

Returns in g the values of the individual ionic conductances. The number of conductances is defined by the size of conductancenames the function conductances(vector<string>&) const returns.

Reimplemented from HodgkinHuxley.

References TraubMiles::GAHPGates, TraubMiles::GCaGates, HodgkinHuxley::GKGates, HodgkinHuxley::GL, and HodgkinHuxley::GNaGates.

void currents ( vector< string > & currentnames ) const

virtual

Returns in currentnames the names of the individual ionic currents that currents(double*) const would return.

Reimplemented from HodgkinHuxley.

void currents ( double * c ) const

virtual

Returns in c the values of the individual ionic currents. The number of currents is defined by the size of currentnames the function currents(vector<string>&) const returns.

Reimplemented from HodgkinHuxley.

References TraubMiles::IAHP, TraubMiles::ICa, HodgkinHuxley::IK, HodgkinHuxley::IL, and HodgkinHuxley::INa.

void add ( void )

virtual

Add parameters as options.

Reimplemented from HodgkinHuxley.

References HodgkinHuxley::add(), SpikingNeuron::conductanceUnit(), TraubMiles::EAHP, TraubMiles::ECa, TraubMiles::GAHP, TraubMiles::GCa, and SpikingNeuron::ModelFlag.