Basic Electrophysiology Relacs Plugins
0.9.8
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#include <spikingneuron.h>
Public Member Functions | |
SimplifiedTraub (void) | |
virtual string | name (void) const |
virtual int | dimension (void) const |
virtual void | variables (vector< string > &varnames) const |
virtual void | units (vector< string > &u) const |
virtual void | operator() (double t, double s, double *x, double *dxdt, int n) |
virtual void | init (double *x) const |
virtual void | add (void) |
virtual void | notify (void) |
Public Member Functions inherited from HodgkinHuxley | |
HodgkinHuxley (void) | |
virtual void | conductances (vector< string > &conductancenames) const |
virtual void | conductances (double *g) const |
virtual void | currents (vector< string > ¤tnames) const |
virtual void | currents (double *c) const |
Public Member Functions inherited from SpikingNeuron | |
SpikingNeuron (void) | |
virtual | ~SpikingNeuron (void) |
virtual string | conductanceUnit (void) const |
virtual string | currentUnit (void) const |
virtual string | inputUnit (void) const |
double | gain (void) const |
double | offset (void) const |
Public Member Functions inherited from ConfigClass | |
ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0) | |
ConfigClass (const ConfigClass &C) | |
virtual | ~ConfigClass (void) |
const string & | configIdent (void) const |
void | setConfigIdent (const string &ident) |
int | configGroup (void) const |
void | setConfigGroup (int group) |
int | configMode (void) const |
void | setConfigMode (int mode) |
void | addConfigMode (int mode) |
void | delConfigMode (int mode) |
int | configSelectMask (void) const |
void | setConfigSelectMask (int mask) |
void | addConfig (void) |
void | readConfig (void) |
virtual void | readConfig (StrQueue &sq) |
virtual void | saveConfig (ofstream &str) |
virtual int | configSize (void) const |
virtual void | config (void) |
virtual void | preConfig (void) |
Protected Attributes | |
double | MV0 |
double | MDV |
double | HV0 |
double | HDV |
double | HTDV |
double | HTOffs |
Protected Attributes inherited from HodgkinHuxley | |
double | C |
double | PT |
double | ENa |
double | EK |
double | EL |
double | GNa |
double | GK |
double | GL |
double | GNaGates |
double | GKGates |
double | INa |
double | IK |
double | IL |
Protected Attributes inherited from SpikingNeuron | |
double | Gain |
double | Offset |
Additional Inherited Members | |
Public Types inherited from ConfigClass | |
enum | Action |
Static Public Member Functions inherited from ConfigClass | |
static void | setConfigureClasses (ConfigureClasses *cfg) |
Static Public Attributes inherited from SpikingNeuron | |
static const int | ScalingFlag = 16 |
static const int | ModelFlag = 32 |
static const int | DescriptionFlag = 64 |
[ModelLib] Simplified 3-dimensional version of the soma compartment Traub-Miles (1991) model
This is a simplified version of the soma compartment of the Traub-Miles model (Roger D. Traub and Robert K. S. Wong and Richard Miles and Hillary Michelson (1991): A model of a CA3 hippocampal pyramidal neuron incorporating voltage-clamp data on intrinsic conductances. J. Neurophysiol. 66, pp. 635-650). There are no Calcium, M-type and AHP-type currents. The n variable is mapped to 1-h and thus the dimension reduced to 3. The activation variables are parameterized with Boltzman-functions.
SimplifiedTraub | ( | void | ) |
References HodgkinHuxley::C, HodgkinHuxley::EK, HodgkinHuxley::EL, HodgkinHuxley::ENa, HodgkinHuxley::GK, HodgkinHuxley::GKGates, HodgkinHuxley::GL, HodgkinHuxley::GNa, HodgkinHuxley::GNaGates, SimplifiedTraub::HDV, SimplifiedTraub::HTDV, SimplifiedTraub::HTOffs, SimplifiedTraub::HV0, HodgkinHuxley::IK, HodgkinHuxley::IL, HodgkinHuxley::INa, SimplifiedTraub::MDV, SimplifiedTraub::MV0, and HodgkinHuxley::PT.
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Reimplemented from HodgkinHuxley.
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Reimplemented from HodgkinHuxley.
Referenced by SimplifiedTraub::units(), and SimplifiedTraub::variables().
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[out] | varnames | the names of each of the dimension() variables. Gating variables (ranging between 0 and 1) should be a single lower-case character, potentials and equivalent potentials a single upper-case character, and concentrations should be in brackets (e.g. [Ca]). |
Reimplemented from HodgkinHuxley.
References SimplifiedTraub::dimension().
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[out] | u | the units of the variables returned by variables(). |
Reimplemented from HodgkinHuxley.
References SimplifiedTraub::dimension().
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Computes the derivative dxdt at time t with stimulus s given the state x.
Reimplemented from HodgkinHuxley.
References HodgkinHuxley::C, HodgkinHuxley::EK, HodgkinHuxley::EL, HodgkinHuxley::ENa, relacs::exp(), HodgkinHuxley::GK, HodgkinHuxley::GKGates, HodgkinHuxley::GL, HodgkinHuxley::GNa, HodgkinHuxley::GNaGates, SimplifiedTraub::HDV, SimplifiedTraub::HTDV, SimplifiedTraub::HTOffs, SimplifiedTraub::HV0, HodgkinHuxley::IK, HodgkinHuxley::IL, HodgkinHuxley::INa, SimplifiedTraub::MDV, and SimplifiedTraub::MV0.
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Initialize the state x with usefull inital conditions.
Reimplemented from HodgkinHuxley.
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Add parameters as options.
Reimplemented from HodgkinHuxley.
References HodgkinHuxley::add(), SimplifiedTraub::HDV, SimplifiedTraub::HTDV, SimplifiedTraub::HTOffs, SimplifiedTraub::HV0, SimplifiedTraub::MDV, SpikingNeuron::ModelFlag, and SimplifiedTraub::MV0.
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Read out the current values from the list of Options.
Reimplemented from HodgkinHuxley.
References SimplifiedTraub::HDV, SimplifiedTraub::HTDV, SimplifiedTraub::HTOffs, SimplifiedTraub::HV0, SimplifiedTraub::MDV, SimplifiedTraub::MV0, and HodgkinHuxley::notify().
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