Basic Electrophysiology Relacs Plugins
0.9.8
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#include <spikingneuron.h>
Public Member Functions | |
MorrisLecar (void) | |
virtual string | name (void) const |
virtual int | dimension (void) const |
virtual void | variables (vector< string > &varnames) const |
virtual void | units (vector< string > &u) const |
virtual void | operator() (double t, double s, double *x, double *dxdt, int n) |
virtual void | init (double *x) const |
virtual void | conductances (vector< string > &conductancenames) const |
virtual void | conductances (double *g) const |
virtual string | conductanceUnit (void) const |
virtual void | currents (vector< string > ¤tnames) const |
virtual void | currents (double *c) const |
virtual string | currentUnit (void) const |
virtual string | inputUnit (void) const |
virtual void | add (void) |
virtual void | notify (void) |
Public Member Functions inherited from SpikingNeuron | |
SpikingNeuron (void) | |
virtual | ~SpikingNeuron (void) |
double | gain (void) const |
double | offset (void) const |
Public Member Functions inherited from ConfigClass | |
ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0) | |
ConfigClass (const ConfigClass &C) | |
virtual | ~ConfigClass (void) |
const string & | configIdent (void) const |
void | setConfigIdent (const string &ident) |
int | configGroup (void) const |
void | setConfigGroup (int group) |
int | configMode (void) const |
void | setConfigMode (int mode) |
void | addConfigMode (int mode) |
void | delConfigMode (int mode) |
int | configSelectMask (void) const |
void | setConfigSelectMask (int mask) |
void | addConfig (void) |
void | readConfig (void) |
virtual void | readConfig (StrQueue &sq) |
virtual void | saveConfig (ofstream &str) |
virtual int | configSize (void) const |
virtual void | config (void) |
virtual void | preConfig (void) |
Protected Attributes | |
double | ECa |
double | EK |
double | EL |
double | GCa |
double | GK |
double | GL |
double | GCaGates |
double | GKGates |
double | ICa |
double | IK |
double | IL |
double | MVCa |
double | MKCa |
double | MVK |
double | MKK |
double | MPhiK |
double | C |
double | TimeScale |
Protected Attributes inherited from SpikingNeuron | |
double | Gain |
double | Offset |
Additional Inherited Members | |
Public Types inherited from ConfigClass | |
enum | Action |
Static Public Member Functions inherited from ConfigClass | |
static void | setConfigureClasses (ConfigureClasses *cfg) |
Static Public Attributes inherited from SpikingNeuron | |
static const int | ScalingFlag = 16 |
static const int | ModelFlag = 32 |
static const int | DescriptionFlag = 64 |
[ModelLib] The Morris-Lecar model
The Morris-Lecar model as specified by Rinzel & Ermentrout (1998).
John Rinzel and Bard Ermentrout (1998): Analysis of neural excitability and oscillations. in: Methods in neural modeling, by Christof Koch and Idan Segev, MIT, pp. 251-292.
MorrisLecar | ( | void | ) |
References MorrisLecar::C, MorrisLecar::ECa, MorrisLecar::EK, MorrisLecar::EL, SpikingNeuron::Gain, MorrisLecar::GCa, MorrisLecar::GCaGates, MorrisLecar::GK, MorrisLecar::GKGates, MorrisLecar::GL, MorrisLecar::ICa, MorrisLecar::IK, MorrisLecar::IL, MorrisLecar::MKCa, MorrisLecar::MKK, MorrisLecar::MPhiK, MorrisLecar::MVCa, MorrisLecar::MVK, SpikingNeuron::Offset, and MorrisLecar::TimeScale.
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Reimplemented from SpikingNeuron.
Reimplemented in MorrisLecarPrescott.
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Implements SpikingNeuron.
Reimplemented in MorrisLecarPrescott.
Referenced by MorrisLecar::units(), and MorrisLecar::variables().
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[out] | varnames | the names of each of the dimension() variables. Gating variables (ranging between 0 and 1) should be a single lower-case character, potentials and equivalent potentials a single upper-case character, and concentrations should be in brackets (e.g. [Ca]). |
Implements SpikingNeuron.
Reimplemented in MorrisLecarPrescott.
References MorrisLecar::dimension().
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[out] | u | the units of the variables returned by variables(). |
Implements SpikingNeuron.
Reimplemented in MorrisLecarPrescott.
References MorrisLecar::dimension().
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Computes the derivative dxdt at time t with stimulus s given the state x.
Implements SpikingNeuron.
Reimplemented in MorrisLecarPrescott.
References MorrisLecar::C, relacs::cosh(), MorrisLecar::ECa, MorrisLecar::EK, MorrisLecar::EL, relacs::exp(), MorrisLecar::GCa, MorrisLecar::GCaGates, MorrisLecar::GK, MorrisLecar::GKGates, MorrisLecar::GL, MorrisLecar::ICa, MorrisLecar::IK, MorrisLecar::IL, MorrisLecar::MKCa, MorrisLecar::MKK, MorrisLecar::MPhiK, MorrisLecar::MVCa, MorrisLecar::MVK, and MorrisLecar::TimeScale.
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Initialize the state x with usefull inital conditions.
Implements SpikingNeuron.
Reimplemented in MorrisLecarPrescott.
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Returns in conductancenames the names of the individual ionic conductances that conductances(double*) const would return.
Reimplemented from SpikingNeuron.
Reimplemented in MorrisLecarPrescott.
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Returns in g the values of the individual ionic conductances. The number of conductances is defined by the size of conductancenames the function conductances() returns.
Reimplemented from SpikingNeuron.
Reimplemented in MorrisLecarPrescott.
References MorrisLecar::GCaGates, MorrisLecar::GKGates, and MorrisLecar::GL.
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Returns the unit of the conductances returned by conductances(double*) const, i.e. nS.
Reimplemented from SpikingNeuron.
Referenced by MorrisLecar::add(), and MorrisLecarPrescott::add().
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Returns in currentnames the names of the individual ionic currents that currents(double*) const would return.
Reimplemented from SpikingNeuron.
Reimplemented in MorrisLecarPrescott.
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Returns in c the values of the individual ionic currents. The number of currents is defined by the size of currentnames the function currents(vector<string>&) const returns.
Reimplemented from SpikingNeuron.
Reimplemented in MorrisLecarPrescott.
References MorrisLecar::ICa, MorrisLecar::IK, and MorrisLecar::IL.
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Returns the unit of the currents returned by currents(double*) const. The default implementation returns uA/cm^2
.
Reimplemented from SpikingNeuron.
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Returns the unit of the input (the stimulus). The default implementation returns uA/cm^2
.
Reimplemented from SpikingNeuron.
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Add parameters as options.
Reimplemented from SpikingNeuron.
Reimplemented in MorrisLecarPrescott.
References SpikingNeuron::add(), MorrisLecar::C, MorrisLecar::conductanceUnit(), MorrisLecar::ECa, MorrisLecar::EK, MorrisLecar::EL, MorrisLecar::GCa, MorrisLecar::GK, MorrisLecar::GL, MorrisLecar::MKCa, MorrisLecar::MKK, SpikingNeuron::ModelFlag, MorrisLecar::MPhiK, MorrisLecar::MVCa, MorrisLecar::MVK, SpikingNeuron::ScalingFlag, and MorrisLecar::TimeScale.
Referenced by MorrisLecarPrescott::add().
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Read out the current values from the list of Options.
Reimplemented from SpikingNeuron.
Reimplemented in MorrisLecarPrescott.
References MorrisLecar::C, MorrisLecar::ECa, MorrisLecar::EK, MorrisLecar::EL, MorrisLecar::GCa, MorrisLecar::GK, MorrisLecar::GL, MorrisLecar::MKCa, MorrisLecar::MKK, MorrisLecar::MPhiK, MorrisLecar::MVCa, MorrisLecar::MVK, SpikingNeuron::notify(), and MorrisLecar::TimeScale.
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