Basic Electrophysiology Relacs Plugins  0.9.8
Public Member Functions | Protected Attributes | List of all members
MilesDai Class Reference

#include <spikingneuron.h>

Inheritance diagram for MilesDai:
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Collaboration diagram for MilesDai:
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Public Member Functions

 MilesDai (void)
 
virtual string name (void) const
 
virtual int dimension (void) const
 
virtual void variables (vector< string > &varnames) const
 
virtual void units (vector< string > &u) const
 
virtual void operator() (double t, double s, double *x, double *dxdt, int n)
 
virtual void init (double *x) const
 
virtual void conductances (vector< string > &conductancenames) const
 
virtual void conductances (double *g) const
 
virtual string conductanceUnit (void) const
 
virtual void currents (vector< string > &currentnames) const
 
virtual void currents (double *c) const
 
virtual string currentUnit (void) const
 
virtual string inputUnit (void) const
 
virtual void add (void)
 
virtual void notify (void)
 
- Public Member Functions inherited from HodgkinHuxley
 HodgkinHuxley (void)
 
- Public Member Functions inherited from SpikingNeuron
 SpikingNeuron (void)
 
virtual ~SpikingNeuron (void)
 
double gain (void) const
 
double offset (void) const
 
- Public Member Functions inherited from ConfigClass
 ConfigClass (const string &ident, int group=0, int mode=0xffff, int selectmask=0)
 
 ConfigClass (const ConfigClass &C)
 
virtual ~ConfigClass (void)
 
const string & configIdent (void) const
 
void setConfigIdent (const string &ident)
 
int configGroup (void) const
 
void setConfigGroup (int group)
 
int configMode (void) const
 
void setConfigMode (int mode)
 
void addConfigMode (int mode)
 
void delConfigMode (int mode)
 
int configSelectMask (void) const
 
void setConfigSelectMask (int mask)
 
void addConfig (void)
 
void readConfig (void)
 
virtual void readConfig (StrQueue &sq)
 
virtual void saveConfig (ofstream &str)
 
virtual int configSize (void) const
 
virtual void config (void)
 
virtual void preConfig (void)
 

Protected Attributes

double ECa
 
double GCa
 
double GKAHP
 
double GLD
 
double GDS
 
double GCaGates
 
double GKAHPGates
 
double ICa
 
double IKAHP
 
double IDS
 
double ILD
 
double ISD
 
double CaA
 
double CaTau
 
double CD
 
- Protected Attributes inherited from HodgkinHuxley
double C
 
double PT
 
double ENa
 
double EK
 
double EL
 
double GNa
 
double GK
 
double GL
 
double GNaGates
 
double GKGates
 
double INa
 
double IK
 
double IL
 
- Protected Attributes inherited from SpikingNeuron
double Gain
 
double Offset
 

Additional Inherited Members

- Public Types inherited from ConfigClass
enum  Action
 
- Static Public Member Functions inherited from ConfigClass
static void setConfigureClasses (ConfigureClasses *cfg)
 
- Static Public Attributes inherited from SpikingNeuron
static const int ScalingFlag = 16
 
static const int ModelFlag = 32
 
static const int DescriptionFlag = 64
 

Detailed Description

[ModelLib] The Miles-Dai model for spinal motoneurones with slowly inactivating sodium current

Author
Jan Benda

The two-compartment model is from G. B. Miles and Y. Dai and R. M. Brownstone (2005): Mechanisms underlying the early phase of spike frequency adaptation in mouse spinal motoneurones. J. Physiol. 566, pp. 519-532. However, all potentials are shifted by -60mV, all conductances are in muS, and capacitances in nF.

Constructor & Destructor Documentation

MilesDai ( void  )

Member Function Documentation

string name ( void  ) const
virtual

Returns
the name of the model.

Reimplemented from HodgkinHuxley.

int dimension ( void  ) const
virtual

Returns
the dimension of the system.
See Also
variables(), operator()()

Reimplemented from HodgkinHuxley.

void variables ( vector< string > &  varnames) const
virtual

Parameters
[out]varnamesthe names of each of the dimension() variables. Gating variables (ranging between 0 and 1) should be a single lower-case character, potentials and equivalent potentials a single upper-case character, and concentrations should be in brackets (e.g. [Ca]).
See Also
dimension(), units(), operator()()

Reimplemented from HodgkinHuxley.

References HodgkinHuxley::variables().

void units ( vector< string > &  u) const
virtual

Parameters
[out]uthe units of the variables returned by variables().
See Also
dimension(), operator()()

Reimplemented from HodgkinHuxley.

References HodgkinHuxley::units().

void operator() ( double  t,
double  s,
double *  x,
double *  dxdt,
int  n 
)
virtual
void init ( double *  x) const
virtual

Initialize the state x with usefull inital conditions.

Reimplemented from HodgkinHuxley.

void conductances ( vector< string > &  conductancenames) const
virtual

Returns in conductancenames the names of the individual ionic conductances that conductances(double*) const would return.

Reimplemented from HodgkinHuxley.

void conductances ( double *  g) const
virtual

Returns in g the values of the individual ionic conductances. The number of conductances is defined by the size of conductancenames the function conductances(vector<string>&) const returns.

Reimplemented from HodgkinHuxley.

References MilesDai::GCaGates, MilesDai::GDS, MilesDai::GKAHPGates, HodgkinHuxley::GKGates, HodgkinHuxley::GL, MilesDai::GLD, and HodgkinHuxley::GNaGates.

string conductanceUnit ( void  ) const
virtual

Returns the unit of the conductances returned by conductances(double*) const, i.e. muS

Reimplemented from SpikingNeuron.

Referenced by MilesDai::add().

void currents ( vector< string > &  currentnames) const
virtual

Returns in currentnames the names of the individual ionic currents that currents(double*) const would return.

Reimplemented from HodgkinHuxley.

void currents ( double *  c) const
virtual

Returns in c the values of the individual ionic currents. The number of currents is defined by the size of currentnames the function currents(vector<string>&) const returns.

Reimplemented from HodgkinHuxley.

References MilesDai::ICa, MilesDai::IDS, HodgkinHuxley::IK, MilesDai::IKAHP, HodgkinHuxley::IL, MilesDai::ILD, HodgkinHuxley::INa, and MilesDai::ISD.

string currentUnit ( void  ) const
virtual

Returns the unit of the currents returned by currents(double*) const, i.e. uA.

Reimplemented from SpikingNeuron.

string inputUnit ( void  ) const
virtual

Returns the unit of the input (the stimulus), i.e. nA.

Reimplemented from SpikingNeuron.

void add ( void  )
virtual
void notify ( void  )
virtual

Member Data Documentation

double ECa
protected
double GCa
protected
double GKAHP
protected
double GLD
protected
double GDS
protected
double GCaGates
protected
double GKAHPGates
protected
double ICa
protected
double IKAHP
protected
double IDS
protected
double ILD
protected
double ISD
protected
double CaA
protected
double CaTau
protected
double CD
protected

The documentation for this class was generated from the following files: