Measure the fishes jamming avoidance response and chirp characteristics at different delta f's and beat contrasts.
- Author
- Jan Benda
- Version
- 2.2 (Sep 21, 2011)
- Bug:
- EOD waveform stimulus broken (samplerate!).
- Options
- Stimulation
duration=10seconds: Signal duration (number)pause=20seconds: Pause between signals (number)ramp=0.5seconds: Duration of linear ramp (number)deltafstep=2Hz: Delta f steps (number)deltafmax=12Hz: Maximum delta f (number)deltafmin=-12Hz: Minimum delta f (number)deltafrange=: Range of delta f's (string)amplsel=contrast: Stimulus amplitude (string)contrastmax=20%: Maximum contrast (number)contrastmin=10%: Minimum contrast (number)contraststep=10%: Contrast steps (number)amplmin=1mV/cm: Minimum amplitude (number)amplmax=2mV/cm: Maximum amplitude (number)amplstep=1mV/cm: Amplitude steps (number)repeats=200: Repeats (integer)- Stimulus
genstim=true: Generate stimulus (boolean)sinewave=false: Use sine wave (boolean)file=: Stimulus file (string)sigstdev=1: Standard deviation of signal (number)warpfile=false: Warp stimulus file to the requested Delta fs (boolean)- Analysis
before=1seconds: Time before stimulation to be analyzed (number)after=5seconds: Time after stimulation to be analyzed (number)savetraces=true: Save traces during pause (boolean)jaraverage=500ms: Time for measuring EOD rate (number)chirpaverage=20ms: Time for measuring chirp data (number)eodsavetime=1000ms: Duration of EOD to be saved (number)
- Files
- jar.dat : summary for each jamming stimulus.
- jarmeans.dat : summary averaged over stimuli with same delta f and contrast.
- jareod.dat : the fishes EOD (actually the stimulus!)
- jareodtraces.dat : frequency, amplitude, and phase of the transdermal EOD during each stimulus.
- jarchirps.dat : data about each chirp.
- jarchirptraces.dat : frequency, amplitude, phase, beat, and beatphase for each chirp.
- jarchirpeod.dat : EOD for each chirp.
- Plots
- EOD frequency (upper plot): time course of the fishes EOD frequency (green). Chirps are marked by yellow dots.
- JAR (lower left plot): Frequency change (yellow, last stimulus red) versus stimulus delta f.
- Chirps (lower middle plot): Number of chirps (yellow) and chirp phase shift (times ten, blue) versus stimulus delta f.
- Chirps (lower right plot): EOD frequency (yellow) and chirp phase shift (time 40, red) for each chirp evoked by the last stimulus.
- Requirements
- EOD recording (
EODTrace1) and events (EODEvents1).
- Transdermal EOD recording (
EODTrace2) and events (EODEvents2).
- Recording of the stimulus events (
SignalEvents1).
